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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G461100
Reference: TK1151 Chr: Chr01 Coordinates: 115537012-115537356 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

345 bp · TkA01G461100|TK1151|cDNA

ATGAATGGTTCCTTCGATCTTGACCTAGCTTTGACCATGGAAGATCACAGATCGACGGACAGCGGGGTGAGTTATATGAATGCCAAAAGGTTGGATCAGTTGCTGCCGGAGGAAGCTTGTGAAAAAGTTTTCGCCATGCCTAGGGTTTCCACCACCTCAGATGGTTGTAGCGTGTGCATGGAAAGTTTTGACTCTAGTTCATCATGTAAACAAGCACCTTGTGGGCATGTGTATCATGATGCTTGCATCACAAAATGGCT...

CDS

Download CDS FASTA

345 bp · TkA01G461100|TK1151|CDS

ATGAATGGTTCCTTCGATCTTGACCTAGCTTTGACCATGGAAGATCACAGATCGACGGACAGCGGGGTGAGTTATATGAATGCCAAAAGGTTGGATCAGTTGCTGCCGGAGGAAGCTTGTGAAAAAGTTTTCGCCATGCCTAGGGTTTCCACCACCTCAGATGGTTGTAGCGTGTGCATGGAAAGTTTTGACTCTAGTTCATCATGTAAACAAGCACCTTGTGGGCATGTGTATCATGATGCTTGCATCACAAAATGGCT...

Protein

Download Protein FASTA

114 aa · TkA01G461100|TK1151|PROTEIN

MNGSFDLDLALTMEDHRSTDSGVSYMNAKRLDQLLPEEACEKVFAMPRVSTTSDGCSVCMESFDSSSSCKQAPCGHVYHDACITKWLSFYNSCPLCRCKVVPNHQKSCSGGSSC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G461100
TK1151 IDTkA01G461100
OH-1004 IDLXL04_002498
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)91.100
Protein coverage (%)TK1151 88.596 / OH-1004 99.020
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G461100
LocationChr01:115537012-115537356 (-)
DescriptionSimilar to rnf181: E3 ubiquitin-protein ligase RNF181
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002498 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0036503 ERAD pathway Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0090378 seed trichome elongation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT3G19950
dre:327056
xla:444028
xtr:496625
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.611
Rank 1 · TkA01G461100 · TK1151
Cytoplasm0.416
Rank 2 · TkA01G461100 · TK1151
Cell membrane0.084
Rank 3 · TkA01G461100 · TK1151
Endoplasmic reticulum0.051
Rank 4 · TkA01G461100 · TK1151
Golgi apparatus0.042
Rank 5 · TkA01G461100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11793FANCL_C28-42 aa
PF17123zf-RING_1139-47 aa
PF13923zf-C3HC4_240-47 aa
PF13771zf-HC5HC2H51-86 aa
PF12678zf-rbx153-97 aa
PF09443CFC53-59 aa
PF13920zf-C3HC4_354-100 aa
PF22908PHD_NSD55-88 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G461100PF11793FANCL_C28420.01316.5
TkA01G461100PF17123zf-RING_1139473e-0833.9
TkA01G461100PF13923zf-C3HC4_240474.1e-0936.8
TkA01G461100PF13771zf-HC5HC2H51860.8610.6
TkA01G461100PF12678zf-rbx153971.2e-0938.9
TkA01G461100PF09443CFC53591.29.8
TkA01G461100PF13920zf-C3HC4_3541000.0008819.7
TkA01G461100PF22908PHD_NSD55880.002618.7
TkA01G461100PF17120zf-RING_16551010.04414.1
TkA01G461100PF13639zf-RING_256975e-1453.0
TkA01G461100PF13923zf-C3HC4_256964.1e-0936.8
TkA01G461100PF17123zf-RING_1156833e-0833.9
TkA01G461100PF13445zf-RING_UBOX56943.4e-0730.9
TkA01G461100PF00097zf-C3HC456967e-0729.7
TkA01G461100PF14634zf-RING_556971.9e-0525.3
TkA01G461100PF12861zf-ANAPC1156990.002118.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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