TkA01G459930 | RubberDandelionOmics

Gene overview

TkA01G459930

Reference: TK1151 Chr: Chr01 Coordinates: 115246339-115247052 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

663 bp · TkA01G459930|TK1151|cDNA

ATGATAAAAGAGAATGAAGATGATGATGGAAATAGTAGTAGTTGTAACAAAGGGAATAACGGCAGTAAGCACCCTGTTTACAGAGGGGTTCGGATGCGGGTATGGGGCAAATGGGTATCGGAGATTAGAGAACCCAAGAAAAAATCTCGGATTTGGCTCGGAACCTTCGCAAATCCGGAGATGGCTGCACGTGCACACGATGTCGCCGCACTTTCTATCAAGGGTAAGTCGGCTATCCTTAATTTCCCTGAACTTGCGGA...

CDS

Download CDS FASTA

663 bp · TkA01G459930|TK1151|CDS

ATGATAAAAGAGAATGAAGATGATGATGGAAATAGTAGTAGTTGTAACAAAGGGAATAACGGCAGTAAGCACCCTGTTTACAGAGGGGTTCGGATGCGGGTATGGGGCAAATGGGTATCGGAGATTAGAGAACCCAAGAAAAAATCTCGGATTTGGCTCGGAACCTTCGCAAATCCGGAGATGGCTGCACGTGCACACGATGTCGCCGCACTTTCTATCAAGGGTAAGTCGGCTATCCTTAATTTCCCTGAACTTGCGGA...

Protein

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220 aa · TkA01G459930|TK1151|PROTEIN

MIKENEDDDGNSSSCNKGNNGSKHPVYRGVRMRVWGKWVSEIREPKKKSRIWLGTFANPEMAARAHDVAALSIKGKSAILNFPELADLLPRPESCSPRDIQAAATKAAAMDHLTTTTTSTAASTLTSTSLVTSEEVSTGTPPEAADELGEIVELPCLGASYDSTKSRNDFVFVDSVWDFYSPSRWSDGYDGGYFGGEPPSSFGSLPSSGGFYFDALLWQH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G459930`
TK1151 ID	TkA01G459930
OH-1004 ID	LXL04_002509
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.100
Protein coverage (%)	TK1151 98.182 / OH-1004 72.360 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G459930

Location Chr01:115246339-115247052 (+)

Description Similar to DREB3: Dehydration-responsive element-binding protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11590`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At4g32800`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g77200`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g25810`	Putative transcriptional activator.	No verified direct reference in this release
`At2g25820`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002509 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G77200

ath:AT2G44940

ath:AT4G32800

ath:AT5G11590

ath:AT5G25810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.941

Rank 1 · TkA01G459930 · TK1151

Cytoplasm0.110

Rank 2 · TkA01G459930 · TK1151

Cell membrane0.041

Rank 3 · TkA01G459930 · TK1151

Endoplasmic reticulum0.037

Rank 4 · TkA01G459930 · TK1151

Plastid0.024

Rank 5 · TkA01G459930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP225-75 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G459930	`PF00847`	AP2	25	75	8.5e-14	52.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LYD3`	Arabidopsis thaliana	sp\|Q9LYD3\|DREB3_ARATH Dehydration-responsive element-binding protein 3	61.100%	Swiss-Prot	High
`Q9M080`	Arabidopsis thaliana	sp\|Q9M080\|ERF43_ARATH Ethylene-responsive transcription factor ERF043	57.600%	Swiss-Prot	High
`O80654`	Arabidopsis thaliana	sp\|O80654\|ERF37_ARATH Ethylene-responsive transcription factor ERF037	54.100%	Swiss-Prot	High
`Q39127`	Arabidopsis thaliana	sp\|Q39127\|TINY_ARATH Ethylene-responsive transcription factor TINY	54.500%	Swiss-Prot	High
`Q52QU1`	Arabidopsis thaliana	sp\|Q52QU1\|ERF42_ARATH Ethylene-responsive transcription factor ERF042	51.100%	Swiss-Prot	High

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