TkA01G459660 | RubberDandelionOmics

Gene overview

TkA01G459660

Reference: TK1151 Chr: Chr01 Coordinates: 115156204-115159060 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2034 bp · TkA01G459660|TK1151|cDNA

AAACAGAGAGATGGATGATTCACCCATATCTATCTAGTTCTACCACGAATAATTGCAGTGTTTTACAACTTGAGGTGTCAAAAGTTGCAGATACTACACTTGATGGACTCAAATTATAACTTATACCAAAAATAGAATTTACTCTCCACTGAACTCCCTTCCCAAAAACGCAGACAGACTTCTTCTTCTGTAATTCTTCCATAGTTCTTTACATTTGTTCTTTTACTCGCGACTATCATTGATTCATCGGTTAACTACAG...

CDS

Download CDS FASTA

1539 bp · TkA01G459660|TK1151|CDS

ATGGAAACACGCCGCCCCTTTCAAAGATTATGTCGAGTTCAAATCCAGAGACTTCTAGTCCTGGTCATAACCCTTGTGGTTGCTCTCATAGTTTTATCTCAGCTAACCGCGTCTCCTTACAAGAACTACACAGCAATTCCATCCCCCATCACCAAGGGCGTTTTGGTCCACAAAGTGGCTATTTACAATGACTCCTCTATGCCACAAGAGGACACTCCAAACGAGTCGAAAGTAGAAGAAAGGTGCCAAGGGCATGATTG...

Protein

Download Protein FASTA

512 aa · TkA01G459660|TK1151|PROTEIN

METRRPFQRLCRVQIQRLLVLVITLVVALIVLSQLTASPYKNYTAIPSPITKGVLVHKVAIYNDSSMPQEDTPNESKVEERCQGHDCNYGSLVSKVTSKGNNSGQNVAVGSKPTRLAYMISVLESAHFNTTLNRKKKDTAIERQLQHARIHIETGPTLKSNEGLHVSLYRNISRFLRSYKLMEETLKVYIYKEGIKPIYHDPKLRGIYASEGWFMKLMEKNRNFVVKDPKKAHLFYLPFSSLKLRLTPQDHTPQSRKNLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G459660`
TK1151 ID	TkA01G459660
OH-1004 ID	LXL04_002513
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.000
Protein coverage (%)	TK1151 99.414 / OH-1004 44.454 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G459660

Location Chr01:115156204-115159060 (+)

Description Similar to At5g03795: Probable glycosyltransferase At5g03795

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03795`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At3g07620`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g25310`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`UniProt: Q9LFP3`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At3g42180`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002513 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G03795

ath:AT5G25310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.765

Rank 1 · TkA01G459660 · TK1151

Endoplasmic reticulum0.099

Rank 2 · TkA01G459660 · TK1151

Cell membrane0.069

Rank 3 · TkA01G459660 · TK1151

Extracellular0.055

Rank 4 · TkA01G459660 · TK1151

Cytoplasm0.044

Rank 5 · TkA01G459660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016Exostosin_GT47183-464 aa

PF24785RXYLT1_C387-430 aa

PF207582B_soluble440-476 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G459660	`PF03016`	Exostosin_GT47	183	464	4.1e-64	217.5
TkA01G459660	`PF24785`	RXYLT1_C	387	430	0.17	12.0
TkA01G459660	`PF20758`	2B_soluble	440	476	0.086	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FFN2`	Arabidopsis thaliana	sp\|Q9FFN2\|GLYT3_ARATH Probable glycosyltransferase At5g03795	44.600%	Swiss-Prot	Medium
`Q9SSE8`	Arabidopsis thaliana	sp\|Q9SSE8\|GLYT1_ARATH Probable glycosyltransferase At3g07620	38.600%	Swiss-Prot	Medium
`Q3E7Q9`	Arabidopsis thaliana	sp\|Q3E7Q9\|GLYT6_ARATH Probable glycosyltransferase At5g25310	39.600%	Swiss-Prot	Medium
`Q9LFP3`	Arabidopsis thaliana	sp\|Q9LFP3\|GLYT4_ARATH Probable glycosyltransferase At5g11130	40.300%	Swiss-Prot	Medium
`Q3EAR7`	Arabidopsis thaliana	sp\|Q3EAR7\|GLYT2_ARATH Probable glycosyltransferase At3g42180	37.300%	Swiss-Prot	Medium

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