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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G458980
Reference: TK1151 Chr: Chr01 Coordinates: 114943319-114949629 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3492 bp · TkA01G458980|TK1151|cDNA

AAGATGATGAGATAAGGGTTTAAAGACCAACCTTTCATTTCCCTCTTTTTCATCCCCAGTCGTTCAGGAAGGAGAGACAGACACGGATAGAGATAGCAGAAACACAAAGCTAAAACCTCCATTACAGGAGCTCAGCTCTTCTCTTTAGGGTGAAGAAGCCGATGAACAATTAGGATAGTTACTAACAGAACCAAACCAAATTGAACCCAAATTCACCATCGGAACAACAAGATGACACCTGTTATCCCTTCAAGCAGCAT...

CDS

Download CDS FASTA

2421 bp · TkA01G458980|TK1151|CDS

ATGCGGGAAAACGAGCCCACAGGTGGTGGCGGTGAATCGTCCCGACCACCGAGAAGAACCGGTCAAAGTCAAAAGTCAAACCAAAGAAGCAACAAAACGACAAAGTTTGTAAAAGGACAGGATCTTGAGGGGACTGTGAAGAATCTGACGAGGTCGGGGGCTTTTGTGAACCTTCCGGAAGGTGAGGAAGGGTTTTTGCCGGCTTCTGAAGAGGCGGATGAAGGGTTTGGGAGTATAATGGGAGGAGGGTCTTCTTTGGA...

Protein

Download Protein FASTA

806 aa · TkA01G458980|TK1151|PROTEIN

MRENEPTGGGGESSRPPRRTGQSQKSNQRSNKTTKFVKGQDLEGTVKNLTRSGAFVNLPEGEEGFLPASEEADEGFGSIMGGGSSLEIGQEVKVRVLRIARGQVTLTMKKDEDNKELDSKLQGKVFTATNPFLVAFRKNEDIASFLDEREKELVVEEEKADTQASVEENVVEASSADEVVTSEEKIDIPEETSDITSSIEDVDTPVTEDEKVEIPEETSNVTSSVEQVDPPVTQDEQVEIPEETSNVASSAEQVDDAPVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G458980
TK1151 IDTkA01G458980
OH-1004 IDLXL04_017682
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)26.300
Protein coverage (%)TK1151 24.194 / OH-1004 95.886
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G458980
LocationChr01:114943319-114949629 (-)
DescriptionNo functional description available
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g29060 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP (By similarity). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2ZLC1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP (By similarity). No verified direct reference in this release
Os12g0541500 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP (By similarity). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017682 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0070125 mitochondrial translational elongation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003746 translation elongation factor activity Molecular Function
GO:0005085 guanyl-nucleotide exchange factor activity Molecular Function
KEGG gene cross-reference
ath:AT4G11120
dosa:Os08g0399600
rcu:8288301
sly:544215
zma:100194093
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.839
Rank 1 · TkA01G458980 · TK1151
Nucleus0.187
Rank 2 · TkA01G458980 · TK1151
Endoplasmic reticulum0.087
Rank 3 · TkA01G458980 · TK1151
Cell membrane0.067
Rank 4 · TkA01G458980 · TK1151
Golgi apparatus0.057
Rank 5 · TkA01G458980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21543CvfB_2nd28-99 aa
PF00575S137-100 aa
PF23459S1_RRP538-102 aa
PF27606UBA_Ucp1243-53 aa
PF00889EF_TS139-170 aa
PF04043PMEI357-402 aa
PF25025EF-Ts_N359-398 aa
PF22562UBA_7361-395 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G458980PF21543CvfB_2nd28990.1113.1
TkA01G458980PF00575S1371002.7e-1041.2
TkA01G458980PF23459S1_RRP5381020.04315.1
TkA01G458980PF27606UBA_Ucp1243530.05713.9
TkA01G458980PF00889EF_TS1391703.1e-58197.4
TkA01G458980PF04043PMEI3574021.210.0
TkA01G458980PF25025EF-Ts_N3593981.3e-1351.4
TkA01G458980PF22562UBA_73613950.01216.2
TkA01G458980PF28540UBA_UBAP23633950.09813.3
TkA01G458980PF22566UBA_83633910.09813.2
TkA01G458980PF18758KDZ3653950.03214.6
TkA01G458980PF17192MukF_M3663990.03714.5
TkA01G458980PF08285DPM33744000.03315.1
TkA01G458980PF00627UBA3763950.1612.5
TkA01G458980PF27606UBA_Ucp123773960.05713.9
TkA01G458980PF27817Ies1_helical3863980.1213.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZD6Arabidopsis thalianasp|Q9SZD6|PETS_ARATH Polyprotein of EF-Ts, chloroplastic64.600%Swiss-ProtHigh
A2ZLC1Oryza sativa subsp. indicasp|A2ZLC1|PETS_ORYSI Polyprotein of EF-Ts, chloroplastic48.600%Swiss-ProtMedium
Q2QP54Oryza sativa subsp. japonicasp|Q2QP54|PETS_ORYSJ Polyprotein of EF-Ts, chloroplastic48.600%Swiss-ProtMedium

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