TkA01G445550 | RubberDandelionOmics

Gene overview

TkA01G445550

Reference: TK1151 Chr: Chr01 Coordinates: 111531187-111531822 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

495 bp · TkA01G445550|TK1151|cDNA

ATGGTTAAACCGGAAAAACCCTCCGTTCCCGACAGGACTAGTGACGCCAAATACAAAGGTGTGAGAAAACGAAAATGGGGAAAATGGGTGTCGGAAATCAGGCTACCAAACAGTCGTGAGAGGATCTGGTTAGGGTCTTACGATTCACCGGAAAAAGCCGCCAGAGCCTTCGACGCCGCTCTCTTCTGTCTCCGTGGCAGCACCGCCAACTTCAACTTCCCTGACGACCCCCCGGATATTCCCAGAGGGAGATCTTTGCC...

CDS

Download CDS FASTA

495 bp · TkA01G445550|TK1151|CDS

ATGGTTAAACCGGAAAAACCCTCCGTTCCCGACAGGACTAGTGACGCCAAATACAAAGGTGTGAGAAAACGAAAATGGGGAAAATGGGTGTCGGAAATCAGGCTACCAAACAGTCGTGAGAGGATCTGGTTAGGGTCTTACGATTCACCGGAAAAAGCCGCCAGAGCCTTCGACGCCGCTCTCTTCTGTCTCCGTGGCAGCACCGCCAACTTCAACTTCCCTGACGACCCCCCGGATATTCCCAGAGGGAGATCTTTGCC...

Protein

Download Protein FASTA

164 aa · TkA01G445550|TK1151|PROTEIN

MVKPEKPSVPDRTSDAKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGSTANFNFPDDPPDIPRGRSLPPSEIQAAAARFANSHATPTMTTEDSSYSSSSSESSPSPSISVYPGFDEFFMTMPPPTDYEENRDGIYVQGPSFLWNF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G445550`
TK1151 ID	TkA01G445550
OH-1004 ID	LXL04_002291
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	76.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G445550

Location Chr01:111531187-111531822 (+)

Description Similar to ERF017: Ethylene-responsive transcription factor ERF017

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g19210`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g74930`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g21960`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At4g31060`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g01250`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002291 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002213 defense response to insect Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009611 response to wounding Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051301 cell division Biological Process

GO:0071497 cellular response to freezing Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G19210

ath:AT1G21910

ath:AT1G74930

ath:AT4G31060

ath:AT5G21960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.858

Rank 1 · TkA01G445550 · TK1151

Cytoplasm0.195

Rank 2 · TkA01G445550 · TK1151

Endoplasmic reticulum0.047

Rank 3 · TkA01G445550 · TK1151

Cell membrane0.046

Rank 4 · TkA01G445550 · TK1151

Plastid0.027

Rank 5 · TkA01G445550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP217-66 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G445550	`PF00847`	AP2	17	66	8.1e-13	49.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84QC2`	Arabidopsis thaliana	sp\|Q84QC2\|ERF17_ARATH Ethylene-responsive transcription factor ERF017	52.300%	Swiss-Prot	High
`Q9S7L5`	Arabidopsis thaliana	sp\|Q9S7L5\|ERF18_ARATH Ethylene-responsive transcription factor ERF018	81.200%	Swiss-Prot	Medium
`Q9C591`	Arabidopsis thaliana	sp\|Q9C591\|ERF16_ARATH Ethylene-responsive transcription factor ERF016	78.300%	Swiss-Prot	Medium
`Q6NLD5`	Arabidopsis thaliana	sp\|Q6NLD5\|ERF15_ARATH Ethylene-responsive transcription factor ERF015	60.900%	Swiss-Prot	Medium
`Q1ECI2`	Arabidopsis thaliana	sp\|Q1ECI2\|ERF23_ARATH Ethylene-responsive transcription factor ERF023	57.800%	Swiss-Prot	Medium

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