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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G443940
Reference: TK1151 Chr: Chr01 Coordinates: 111103123-111104586 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1278 bp · TkA01G443940|TK1151|cDNA

ATGCAGGCTTTGAGAAGTTTTTTGAGAAATCCAACAATTTCTATTGTAGAAACATGCAAAACCCGTGTAGAAATAAACCAAATACACTCCCAATTGCTGGTTAATGGTTTCGTCAATGACCCAGATCTTGTATCCAAATTTGCTGCATCAATCGCCCTCAAACACCCTCAAAATATCGATTATTCTGTTCAACTATTGGACCAATGTGAAAATCCTTCAGTGTTTGCTTTAAACTCTCTGATCAGAGTTTACTCCAAGAG...

CDS

Download CDS FASTA

1278 bp · TkA01G443940|TK1151|CDS

ATGCAGGCTTTGAGAAGTTTTTTGAGAAATCCAACAATTTCTATTGTAGAAACATGCAAAACCCGTGTAGAAATAAACCAAATACACTCCCAATTGCTGGTTAATGGTTTCGTCAATGACCCAGATCTTGTATCCAAATTTGCTGCATCAATCGCCCTCAAACACCCTCAAAATATCGATTATTCTGTTCAACTATTGGACCAATGTGAAAATCCTTCAGTGTTTGCTTTAAACTCTCTGATCAGAGTTTACTCCAAGAG...

Protein

Download Protein FASTA

425 aa · TkA01G443940|TK1151|PROTEIN

MQALRSFLRNPTISIVETCKTRVEINQIHSQLLVNGFVNDPDLVSKFAASIALKHPQNIDYSVQLLDQCENPSVFALNSLIRVYSKSSTPEKCFDFYKRIVKSNHQPDNYTFTFLIKSAAQLLVKNLGLAVHGQLFDKMPDRDVIAWNAMIAGYVQYAEPSKGLELFNMMEINGLKVNEATMVSVLSACTQLGDLDAGQRAHRYINHKRLQINITLGSALVNMYAKCGDINTAMKVFWGMKEKNVYTWSGAIGGLAMNGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G443940
TK1151 IDTkA01G443940
OH-1004 IDLXL04_002273
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)82.300
Protein coverage (%)TK1151 100.000 / OH-1004 98.583
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G443940
LocationChr01:111103123-111104586 (-)
DescriptionSimilar to PCMP-H14: Putative pentatricopeptide repeat-containing protein At5g40405
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g40405 Putative pentatricopeptide repeat-containing protein At5g40405. No verified direct reference in this release
At5g06540 Pentatricopeptide repeat-containing protein At5g06540. No verified direct reference in this release
At5g66520 Pentatricopeptide repeat-containing protein At5g66520. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At3g28640 Putative pentatricopeptide repeat-containing protein At3g28640. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002273 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT5G06540
ath:AT5G08305
ath:AT5G15300
ath:AT5G40405
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.638
Rank 1 · TkA01G443940 · TK1151
Plastid0.198
Rank 2 · TkA01G443940 · TK1151
Nucleus0.049
Rank 3 · TkA01G443940 · TK1151
Cytoplasm0.033
Rank 4 · TkA01G443940 · TK1151
Cell membrane0.005
Rank 5 · TkA01G443940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_2420-46 aa
PF10602RPN725-48 aa
PF23276TPR_2453-100 aa
PF17177PPR_long68-117 aa
PF12854PPR_171-84 aa
PF13041PPR_272-118 aa
PF13812PPR_372-85 aa
PF29070MSC6_N76-122 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G443940PF23276TPR_2420461e-1248.8
TkA01G443940PF10602RPN725480.2611.6
TkA01G443940PF23276TPR_24531001e-1248.8
TkA01G443940PF17177PPR_long681171.2e-1454.9
TkA01G443940PF12854PPR_171841.1e-1764.2
TkA01G443940PF13041PPR_2721181.3e-38131.6
TkA01G443940PF13812PPR_372858.7e-1452.1
TkA01G443940PF29070MSC6_N761225e-0936.4
TkA01G443940PF18768RNPP_C761170.05713.6
TkA01G443940PF10602RPN7761020.2611.6
TkA01G443940PF01535PPR771045e-33111.7
TkA01G443940PF13428TPR_14791090.0006320.9
TkA01G443940PF26713TPR_RPO41_N851210.0116.2
TkA01G443940PF13812PPR_31011318.7e-1452.1
TkA01G443940PF12854PPR_11041181.1e-1764.2
TkA01G443940PF22330Rib_mS39_PPR1331580.311.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FND7Arabidopsis thalianasp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g4040544.300%Swiss-ProtMedium
Q9FG16Arabidopsis thalianasp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g0654036.300%Swiss-ProtMedium
Q9FJY7Arabidopsis thalianasp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g6652032.500%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial36.700%Swiss-ProtMedium
Q9LJJ1Arabidopsis thalianasp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g2864032.900%Swiss-ProtMedium

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