TkA01G443520 | RubberDandelionOmics

Gene overview

TkA01G443520

Reference: TK1151 Chr: Chr01 Coordinates: 110941663-110946767 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2009 bp · TkA01G443520|TK1151|cDNA

TACAACGCGATAGAATTTACAATACGTAAAAACCAAAATCTAGGGCTTTTATTGCATTTGTCTATACAAATTTCCCGTTGCTCGAAACTAGCACAGATAAAATCCCCAATTCCTACTCCATTCCATTTTTCTATCCTCTCTTTCACTTTCACGTTATCTTTTCGGCTTCCTATGGCGAATGTTGAAGATGAAATCTCTCCTTACGCAAGCGGCGGAGCCGGAGAAAAGCTTTTTAAGAGGCCTTTTCGACCAGAGATTTA...

CDS

Download CDS FASTA

1791 bp · TkA01G443520|TK1151|CDS

TACAACGCGATAGAATTTACAATACGTAAAAACCAAAATCTAGGGCTTTTATTGCATTTGTCTATACAAATTTCCCGTTGCTCGAAACTAGCACAGATAAAATCCCCAATTCCTACTCCATTCCATTTTTCTATCCTCTCTTTCACTTTCACGTTATCTTTTCGGCTTCCTATGGCGAATGTTGAAGATGAAATCTCTCCTTACGCAAGCGGCGGAGCCGGAGAAAAGCTTTTTAAGAGGCCTTTTCGACCAGAGATTTA...

Protein

Download Protein FASTA

596 aa · TkA01G443520|TK1151|PROTEIN

YNAIEFTIRKNQNLGLLLHLSIQISRCSKLAQIKSPIPTPFHFSILSFTFTLSFRLPMANVEDEISPYASGGAGEKLFKRPFRPEIYEEAQNVSHEAGRDISCLSSHQCGNFATFGKSELEEMLKQMTFTRSEAQHFISLLHSRTIEDEKSPTPVSRLEASISSGSLKRHKHESHNFREEEIASPADLANVFKGSSSTICRQDSKSINNNATSTCLPITSPQHPATMENLPDELLTNIFIRLLAKQLAQMRSVSKSWNAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G443520`
TK1151 ID	TkA01G443520
OH-1004 ID	LXL04_028493
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	89.700
Protein coverage (%)	TK1151 97.483 / OH-1004 63.084 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G443520

Location Chr01:110941663-110946767 (-)

Description Similar to At3g06240: F-box/kelch-repeat protein At3g06240

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06240`	F-box/kelch-repeat protein At3g06240.	No verified direct reference in this release
`At1g26515`	Putative F-box protein At1g26515.	No verified direct reference in this release
`At2g14710`	F-box protein At2g14710.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028493 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009626 plant-type hypersensitive response Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042177 negative regulation of protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT3G06240

ath:AT3G23880

ath:AT4G12560

ath:AT4G22390

ath:AT4G38870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.619

Rank 1 · TkA01G443520 · TK1151

Cytoplasm0.423

Rank 2 · TkA01G443520 · TK1151

Cell membrane0.079

Rank 3 · TkA01G443520 · TK1151

Endoplasmic reticulum0.062

Rank 4 · TkA01G443520 · TK1151

Mitochondrion0.024

Rank 5 · TkA01G443520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like228-265 aa

PF00646F-box228-266 aa

PF03478Beta-prop_KIB1-4245-296 aa

PF07734FBA_1314-561 aa

PF03478Beta-prop_KIB1-4321-517 aa

PF08268FBA_3326-533 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G443520	`PF12937`	F-box-like	228	265	8.6e-08	32.5
TkA01G443520	`PF00646`	F-box	228	266	1.3e-07	32.0
TkA01G443520	`PF03478`	Beta-prop_KIB1-4	245	296	9.9e-06	26.0
TkA01G443520	`PF07734`	FBA_1	314	561	3.9e-20	72.8
TkA01G443520	`PF03478`	Beta-prop_KIB1-4	321	517	9.9e-06	26.0
TkA01G443520	`PF08268`	FBA_3	326	533	5.9e-25	88.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GXC7`	Arabidopsis thaliana	sp\|Q8GXC7\|FBK50_ARATH F-box/kelch-repeat protein At3g06240	31.000%	Swiss-Prot	Medium
`Q9FZD6`	Arabidopsis thaliana	sp\|Q9FZD6\|FB306_ARATH Putative F-box protein At1g26515	28.700%	Swiss-Prot	Low
`O80980`	Arabidopsis thaliana	sp\|O80980\|FB319_ARATH F-box protein At2g14710	25.100%	Swiss-Prot	Low

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