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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G435360
Reference: TK1151 Chr: Chr01 Coordinates: 108745438-108747306 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1869 bp · TkA01G435360|TK1151|cDNA

ATGGGATCAAGCTTACCGCAAACTGAATTCTTTCATAACAATGTTATTTCTATTTACGCTACACTGGGTTACATATCTGTTGCCCGCAAGGTGTTCGATGAAATGCCTCATAAGAATGTTGTTTCTTACAATGCCATGATCGGTTCTTATACTCGTGATGGGAAAGACAAAGAAGCTTGCAACTTGTTTTCCGACATGAGAAATCAAGGGCTGGTTCCAACTCAATTCACATATGGCAGCCTATTCTCGTGTGATTCACT...

CDS

Download CDS FASTA

1869 bp · TkA01G435360|TK1151|CDS

ATGGGATCAAGCTTACCGCAAACTGAATTCTTTCATAACAATGTTATTTCTATTTACGCTACACTGGGTTACATATCTGTTGCCCGCAAGGTGTTCGATGAAATGCCTCATAAGAATGTTGTTTCTTACAATGCCATGATCGGTTCTTATACTCGTGATGGGAAAGACAAAGAAGCTTGCAACTTGTTTTCCGACATGAGAAATCAAGGGCTGGTTCCAACTCAATTCACATATGGCAGCCTATTCTCGTGTGATTCACT...

Protein

Download Protein FASTA

622 aa · TkA01G435360|TK1151|PROTEIN

MGSSLPQTEFFHNNVISIYATLGYISVARKVFDEMPHKNVVSYNAMIGSYTRDGKDKEACNLFSDMRNQGLVPTQFTYGSLFSCDSLDPKQGICLQTVAMKSGLLFADAFVGTALLGMFGRQGYVHEAFMVFDEMPFKNLVTWNAMISLFGHQGSSDTCMLMFSDLMRTQITLSEPSFVGILTGFQSYQDLESGKQLHGLIIKFGLESSVSIANSLVKMYGKCGDNKSLAEKMFKFVPNRDILSWNTIIGVLAKGKEPIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G435360
TK1151 IDTkA01G435360
OH-1004 IDLXL04_002623
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.800
Protein coverage (%)TK1151 100.000 / OH-1004 89.255
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G435360
LocationChr01:108745438-108747306 (+)
DescriptionSimilar to At3g58590: Pentatricopeptide repeat-containing protein At3g58590
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g58590 Pentatricopeptide repeat-containing protein At3g58590. No verified direct reference in this release
At3g09040 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial. No verified direct reference in this release
At4g39530 Pentatricopeptide repeat-containing protein At4g39530. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At3g03580 Pentatricopeptide repeat-containing protein At3g03580. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002623 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G09040
ath:AT3G58590
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.732
Rank 1 · TkA01G435360 · TK1151
Plastid0.129
Rank 2 · TkA01G435360 · TK1151
Nucleus0.041
Rank 3 · TkA01G435360 · TK1151
Cytoplasm0.030
Rank 4 · TkA01G435360 · TK1151
Cell membrane0.006
Rank 5 · TkA01G435360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_213-40 aa
PF01535PPR13-39 aa
PF13812PPR_314-36 aa
PF23276TPR_2414-84 aa
PF12854PPR_115-35 aa
PF17177PPR_long27-84 aa
PF22330Rib_mS39_PPR27-48 aa
PF13041PPR_238-83 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G435360PF13041PPR_213401.3e-73243.6
TkA01G435360PF01535PPR13393.6e-59193.7
TkA01G435360PF13812PPR_314361e-29103.1
TkA01G435360PF23276TPR_2414844.2e-1350.1
TkA01G435360PF12854PPR_115356.2e-37125.7
TkA01G435360PF17177PPR_long27841.6e-0938.2
TkA01G435360PF22330Rib_mS39_PPR27480.02215.3
TkA01G435360PF13041PPR_238831.3e-73243.6
TkA01G435360PF12854PPR_139676.2e-37125.7
TkA01G435360PF13812PPR_339821e-29103.1
TkA01G435360PF01535PPR41713.6e-59193.7
TkA01G435360PF10037MRP-S2742770.07512.7
TkA01G435360PF29070MSC6_N44782.3e-1040.8
TkA01G435360PF12854PPR_170816.2e-37125.7
TkA01G435360PF10037MRP-S271051350.07512.7
TkA01G435360PF13041PPR_21131391.3e-73243.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WN01Arabidopsis thalianasp|Q0WN01|PP286_ARATH Pentatricopeptide repeat-containing protein At3g5859043.900%Swiss-ProtMedium
Q9SS83Arabidopsis thalianasp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial28.800%Swiss-ProtLow
Q9SVA5Arabidopsis thalianasp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g3953028.100%Swiss-ProtLow
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365025.600%Swiss-ProtLow
Q9SS60Arabidopsis thalianasp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g0358028.400%Swiss-ProtLow

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