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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G430880
Reference: TK1151 Chr: Chr01 Coordinates: 107663751-107670333 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3422 bp · TkA01G430880|TK1151|cDNA

AAATAAGTAGGTATTATACTATATATTAAATCTCGTGGCTCTTATGAATAGTAGCTCCAAACCTAGCTCCAAACCTAGCTCCAAACCAAATTCCTCTCCAAATTCCAAACCGTCTCCAAATTTCTTTCTCTGGCGACACCCTATAGCTTCAAACTGTGGATTGCTCAAATTCTTCCCCAATGCGCTCCATCCTAAAATAATCGAAGGAGGGTGTAGAGTGATCGACCCTTTTTCTCTTCCAAGTCGGAATCCGCCCTCCG...

CDS

Download CDS FASTA

2316 bp · TkA01G430880|TK1151|CDS

ATGAGTGAAAGTTTCTGCACTCCAATAATGATTGCCCGCCAATTGATATTCAAATGCATCCACCCTAAAAGAGTAGCAAACTTCCATTCGTTTCAAGATGGGCACCAACTGTTCGTTCAAATTCCTCAGCCAAACCTCGGCTATCTCCACGACTCCATGCTTGATCTATTGCACCAAAACCGACCATTCCAAGCTCTCGATATTTTCAAGAAACAGATTCGGGAAGTGGGCGTTACTCATGTCGATGAAGTTTCTACTGC...

Protein

Download Protein FASTA

771 aa · TkA01G430880|TK1151|PROTEIN

MSESFCTPIMIARQLIFKCIHPKRVANFHSFQDGHQLFVQIPQPNLGYLHDSMLDLLHQNRPFQALDIFKKQIREVGVTHVDEVSTALATKACRGDPKLGCQIHGFALTSGLDSFLSVSNSLMHMYSKSGQLDRAMVIFEKLTNPDIVSFNTLLSGTNNSTDALNFACRMNHIGVTFDAVTYTSALAHSADCEEFLFGTQLHSLLLKSGMQSEGFIANALITLYSKWEQIVNAEKVFDEMPQKDLVSWNAMLSGYSQEGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G430880
TK1151 IDTkA01G430880
OH-1004 IDLXL04_002676
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G430880
LocationChr01:107663751-107670333 (+)
DescriptionSimilar to PCMP-E40: Pentatricopeptide repeat-containing protein At4g32430, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g32430 Pentatricopeptide repeat-containing protein At4g32430, mitochondrial. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At3g02330 Involved in C-to-U editing of mitochondrial RNA.
MEF13 Requires MORF3 and MORF8 for RNA Editing at Eight Targets in Mitochondrial mRNAs in Arabidopsis thaliana.2015 · DOI: 10.1016/j.molp.2015.05.008
At3g49170 May play a role in embryogenesis. No verified direct reference in this release
At2g27610 Pentatricopeptide repeat-containing protein At2g27610. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002676 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:1905639 positive regulation of mitochondrial mRNA catabolic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G27610
ath:AT4G32430
ath:AT4G39530
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.737
Rank 1 · TkA01G430880 · TK1151
Plastid0.128
Rank 2 · TkA01G430880 · TK1151
Nucleus0.050
Rank 3 · TkA01G430880 · TK1151
Cytoplasm0.031
Rank 4 · TkA01G430880 · TK1151
Cell membrane0.006
Rank 5 · TkA01G430880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04952AstE_AspA_hybrid17-40 aa
PF23276TPR_2487-147 aa
PF18768RNPP_C116-151 aa
PF00637Clathrin119-147 aa
PF13041PPR_2120-156 aa
PF01535PPR120-142 aa
PF12854PPR_1120-141 aa
PF29070MSC6_N120-164 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G430880PF04952AstE_AspA_hybrid17400.09813.4
TkA01G430880PF23276TPR_24871478.5e-1349.1
TkA01G430880PF18768RNPP_C1161510.1512.2
TkA01G430880PF00637Clathrin1191470.00716.8
TkA01G430880PF13041PPR_21201566.8e-54180.5
TkA01G430880PF01535PPR1201427.4e-51167.6
TkA01G430880PF12854PPR_11201412.6e-2794.9
TkA01G430880PF29070MSC6_N1201648.2e-2175.2
TkA01G430880PF13812PPR_31201553.1e-2072.7
TkA01G430880PF17177PPR_long1221472.9e-0627.5
TkA01G430880PF13428TPR_141221420.0001622.8
TkA01G430880PF19189Mtf21221501.19.7
TkA01G430880PF13176TPR_71241410.02615.3
TkA01G430880PF22330Rib_mS39_PPR1331575.9e-0523.6
TkA01G430880PF12854PPR_11441562.6e-2794.9
TkA01G430880PF13041PPR_21451846.8e-54180.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84MA3Arabidopsis thalianasp|Q84MA3|PP345_ARATH Pentatricopeptide repeat-containing protein At4g32430, mitochondrial47.800%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic29.600%Swiss-ProtLow
Q9FWA6Arabidopsis thalianasp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330, mitochondrial28.300%Swiss-ProtLow
Q5G1T1Arabidopsis thalianasp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic29.600%Swiss-ProtLow
Q9ZUW3Arabidopsis thalianasp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g2761028.900%Swiss-ProtLow

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