TkA01G418380 | RubberDandelionOmics

Gene overview

TkA01G418380

Reference: TK1151 Chr: Chr01 Coordinates: 104467150-104469571 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2034 bp · TkA01G418380|TK1151|cDNA

TAAAGATTGCAAGCCATTACACGAGAAGGAGAATTTATTTGTCGACGACTCGTAGTTCTCTCTTCTCTGTCGCTCTATGACTTCATTAACCATTCGTATTCCTTCGCTTCCTTTTCCTAAATCCATGGGATTTTGCCTCTAACAATGCGTCTTCGTCTTTTTTACTTCTAACATTACTCATCGCTCGTGGAACTCTGTTCGTTTCCTCAAATCACCGTCGGAAAACCCTAATTGTTTCCATCCTTGTAGCAATGGAATTC...

CDS

Download CDS FASTA

900 bp · TkA01G418380|TK1151|CDS

ATGGAATTCAGGGTGCCAGGATTCAGTGTGGGAATGCAGCACAATCAAGTTTATCCTACACCTTCAGCATCAGTTTCATTCAACTATACTAACTTTTCCGATCAGACATCGGAAGGAGGACCGGCTCGTATGAGAGAGGCGATTCAGCGTGAACTTGAGAAGGAGATGATACGGGAGAAGATTATAGCAGAGGAAGTGGAACGTTTTCATGTTTTGGAAGCAGAAGTGAGGAGGGAATTGATGATCGGACGAGAGATGAT...

Protein

Download Protein FASTA

299 aa · TkA01G418380|TK1151|PROTEIN

MEFRVPGFSVGMQHNQVYPTPSASVSFNYTNFSDQTSEGGPARMREAIQRELEKEMIREKIIAEEVERFHVLEAEVRRELMIGREMMAMKNGMGFPSSFMLGPQPGEIRQPSTLPLKVGTGNLNCPTLPEATLKPPPPPPPPPSLPATGGSTEHNPCIPKKKMEWRCSICKISATCERGLLEHLAGKCHHVKAASIVMNNSPKCSPSSNQKMEWRCPICEVSAPCEQGLQDHLAGKKHESKVAALKADNTETELLEKKME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G418380`
TK1151 ID	TkA01G418380
OH-1004 ID	LXL04_034405
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	92.700
Protein coverage (%)	TK1151 13.712 / OH-1004 32.520 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G418380`
Location	Chr01:104467150-104469571 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_034405` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.934

Rank 1 · TkA01G418380 · TK1151

Cytoplasm0.105

Rank 2 · TkA01G418380 · TK1151

Cell membrane0.033

Rank 3 · TkA01G418380 · TK1151

Endoplasmic reticulum0.021

Rank 4 · TkA01G418380 · TK1151

Plastid0.021

Rank 5 · TkA01G418380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16101PRIMA1122-176 aa

PF25142CUB_CDCP1_4th156-180 aa

PF02891zf-MIZ160-172 aa

PF10058Zn_ribbon_10160-172 aa

PF14311DUF4379160-171 aa

PF25164CoiA_N160-171 aa

PF16988Vps36-NZF-N161-173 aa

PF21936Pcf11_C161-172 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G418380	`PF16101`	PRIMA1	122	176	0.27	11.7
TkA01G418380	`PF25142`	CUB_CDCP1_4th	156	180	9.8	7.2
TkA01G418380	`PF02891`	zf-MIZ	160	172	0.082	13.4
TkA01G418380	`PF10058`	Zn_ribbon_10	160	172	0.17	12.4
TkA01G418380	`PF14311`	DUF4379	160	171	0.56	11.2
TkA01G418380	`PF25164`	CoiA_N	160	171	7.1	6.9
TkA01G418380	`PF16988`	Vps36-NZF-N	161	173	8.2e-07	29.1
TkA01G418380	`PF21936`	Pcf11_C	161	172	0.56	10.9
TkA01G418380	`PF12756`	zf-C2H2_2	163	191	6.2e-06	27.1
TkA01G418380	`PF19126`	DUF5810	163	185	0.00036	21.3
TkA01G418380	`PF23320`	Zn_SUZ12	163	189	0.02	15.3
TkA01G418380	`PF04810`	zf-Sec23_Sec24	163	173	0.088	13.6
TkA01G418380	`PF27180`	HI_1489_N	163	183	0.46	11.5
TkA01G418380	`PF25429`	zf-POGZ	163	184	0.59	11.4
TkA01G418380	`PF05605`	zf-Di19	164	185	0.099	13.6
TkA01G418380	`PF24634`	DUF7631	164	184	0.12	13.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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