TkA01G408340 | RubberDandelionOmics

Gene overview

TkA01G408340

Reference: TK1151 Chr: Chr01 Coordinates: 101897986-101909713 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1677 bp · TkA01G408340|TK1151|cDNA

TTTCACTTGGTATAAGAACTAATGTTCTTCTCTAACCACCAAGGTCTTGATCTTATATATACCTCTCTAGTCTCTATATGTCTCTCTTAAAACACGCTGCAGCAAGGGGAAGACAAGAGAAGCCATAGTTTTCATTACCCGCATCAAAGAAAGCTAGTTCCTTGAAATGAATATATTTTCTTGGAAATATCTTTAAACGACAAATGTAAACGGCTACCGAACACCCTATCTCCAATTGGGGGAAAGCCACGCGGGTCTCG...

CDS

Download CDS FASTA

1164 bp · TkA01G408340|TK1151|CDS

ATGGATTCCAAACAGGTGAACCAAGAAGAAGAATCCTCCGTAGTCTTGACGTTGCCGATATCCTTGGATTGTGAGTCCGGCAACGATTATAAGGCACCGAATATACTCCAGCGATTATTGAGTCTCTTGAAGAATGTTCGGCCAGGATCGGATCTTACTCGGTTCACGTTACCACCGATCTTCAACATTCCCAAATCACAACTTCAATGCTATGGAGAATCAGTATACTGTGTGAACAACGACCTCCTTACGAGATGTGC...

Protein

Download Protein FASTA

387 aa · TkA01G408340|TK1151|PROTEIN

MDSKQVNQEEESSVVLTLPISLDCESGNDYKAPNILQRLLSLLKNVRPGSDLTRFTLPPIFNIPKSQLQCYGESVYCVNNDLLTRCANGGTPIERFSSVIAWSISTLRPLMFGVAPYNPILGETHHVSRGNLNVLLEQVSHHPPVSALHATNEEDNIEMTWCQYAIPKFCGTSIETRVNGKRHLKLLNKGESYEMNTPNLVIKFLPFPDVEWIGNVTIRCQETGLEAQLCYKGNSLFGKRGNYRSIKGKIISTSNMKTIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G408340`
TK1151 ID	TkA01G408340
OH-1004 ID	LXL04_022813
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	26.900
Protein coverage (%)	TK1151 80.103 / OH-1004 71.082 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G408340

Location Chr01:101897986-101909713 (+)

Description Similar to ORP3A: Oxysterol-binding protein-related protein 3A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57240`	May be involved in the transport of sterols.	No verified direct reference in this release
`At4g25850`	May be involved in the transport of sterols.	No verified direct reference in this release
`At4g25860`	May be involved in the transport of sterols.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022813 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006869 lipid transport Biological Process

GO:0006887 exocytosis Biological Process

GO:0006897 endocytosis Biological Process

GO:0009567 double fertilization forming a zygote and endosperm Biological Process

GO:0015914 phospholipid transport Biological Process

GO:0030011 maintenance of cell polarity Biological Process

GO:0034727 piecemeal microautophagy of the nucleus Biological Process

GO:0050830 defense response to Gram-positive bacterium Biological Process

GO:0120011 intermembrane sterol transfer Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G09300

ath:AT5G02100

ath:AT5G59420

ddi:DDB_G0283709

spo:2540357

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.543

Rank 1 · TkA01G408340 · TK1151

Nucleus0.235

Rank 2 · TkA01G408340 · TK1151

Cell membrane0.169

Rank 3 · TkA01G408340 · TK1151

Golgi apparatus0.148

Rank 4 · TkA01G408340 · TK1151

Endoplasmic reticulum0.117

Rank 5 · TkA01G408340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01237Oxysterol_BP40-282 aa

PF05870PA_decarbox276-359 aa

PF01237Oxysterol_BP321-375 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G408340	`PF01237`	Oxysterol_BP	40	282	1.6e-58	199.1
TkA01G408340	`PF05870`	PA_decarbox	276	359	0.18	12.2
TkA01G408340	`PF01237`	Oxysterol_BP	321	375	1.6e-58	199.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVD4`	Arabidopsis thaliana	sp\|Q9LVD4\|ORP4C_ARATH Oxysterol-binding protein-related protein 4C	51.200%	Swiss-Prot	High
`Q9SW00`	Arabidopsis thaliana	sp\|Q9SW00\|ORP4B_ARATH Oxysterol-binding protein-related protein 4B	50.800%	Swiss-Prot	High
`Q9SVZ9`	Arabidopsis thaliana	sp\|Q9SVZ9\|ORP4A_ARATH Oxysterol-binding protein-related protein 4A	50.900%	Swiss-Prot	High

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