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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G404600
Reference: TK1151 Chr: Chr01 Coordinates: 101007296-101010614 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3241 bp · TkA01G404600|TK1151|cDNA

AAAATTCATTAGATTTTTTGAACAAAAATCGTTGGAAAAAACCCCAGCATTGCTTTCAAGTTCGATTCTACGAAGGACGCCAAACCGGAAAGATTTATTTGGTGTACATTCCGCCCAAAACCATTTCCTTTTGTGATATTTTTTCCATGCCGTTTGAAATTGAATAAATCCTATCAGAAACCTGCCATAATTTCTGGTGTTTTCTTCTTCCTCGGTCATCAATGGCTGACAAGCTAGCTCTTCCTCTTCTCCTCCCAAGT...

CDS

Download CDS FASTA

2427 bp · TkA01G404600|TK1151|CDS

ATGGCTGACAAGCTAGCTCTTCCTCTTCTCCTCCCAAGTCCTCCAGTATCTAAACCCTTCTCTCAAGACTTCCACCACCAACCACCACCACAGTCGTTAACCCCCCTGCTAAAAGACATCCTGCAACCGAATTCCGCCACCGCCAAACCCCCTTCTCCGATAATCCCCAGAACACGACGTCGTATCGGAAAACACAACGACCCAAACAAAGGAAGACCCTGGTCTTCTCACTTATCTCCACGAGGTCAGCAAATCTTCCA...

Protein

Download Protein FASTA

808 aa · TkA01G404600|TK1151|PROTEIN

MADKLALPLLLPSPPVSKPFSQDFHHQPPPQSLTPLLKDILQPNSATAKPPSPIIPRTRRRIGKHNDPNKGRPWSSHLSPRGQQIFQTLTDSGFSSSSEVNQNLLNLVDYHEQNESEFATKSLSLDILGLIQGLIHYKKLDLALIVFNWVKNHYKDTGKPLRGSVVAVIISMLGKDNRVSVASSLIRSLQKDNFTIDVYAYTSLITAYANNGRFREAISVFKEMEEEGIQPTKITYNVILNVYGKMGMPWDKIESIFNDM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G404600
TK1151 IDTkA01G404600
OH-1004 IDLXL04_003012
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 35.644 / OH-1004 24.978
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G404600
LocationChr01:101007296-101010614 (+)
DescriptionSimilar to At5g02860: Pentatricopeptide repeat-containing protein At5g02860
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g02860 Pentatricopeptide repeat-containing protein At5g02860. No verified direct reference in this release
At2g18940 Pentatricopeptide repeat-containing protein At2g18940, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003012 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT2G18940
ath:AT5G02860
zma:100302579
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.599
Rank 1 · TkA01G404600 · TK1151
Mitochondrion0.296
Rank 2 · TkA01G404600 · TK1151
Nucleus0.058
Rank 3 · TkA01G404600 · TK1151
Cytoplasm0.027
Rank 4 · TkA01G404600 · TK1151
Cell membrane0.010
Rank 5 · TkA01G404600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N83-113 aa
PF22330Rib_mS39_PPR84-116 aa
PF19189Mtf2108-153 aa
PF13041PPR_2130-152 aa
PF13812PPR_3130-152 aa
PF01535PPR130-148 aa
PF29070MSC6_N130-218 aa
PF23276TPR_24165-294 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G404600PF29070MSC6_N831132.4e-55188.9
TkA01G404600PF22330Rib_mS39_PPR841160.3811.2
TkA01G404600PF19189Mtf21081534.1e-0937.2
TkA01G404600PF13041PPR_21301521.2e-144471.1
TkA01G404600PF13812PPR_31301523.7e-124405.6
TkA01G404600PF01535PPR1301485.2e-111356.2
TkA01G404600PF29070MSC6_N1302182.4e-55188.9
TkA01G404600PF23276TPR_241652941e-47162.1
TkA01G404600PF17177PPR_long1662477.5e-49166.7
TkA01G404600PF10037MRP-S271662457e-0522.7
TkA01G404600PF13041PPR_21682101.2e-144471.1
TkA01G404600PF01535PPR1691935.2e-111356.2
TkA01G404600PF12854PPR_11691862.3e-110360.7
TkA01G404600PF13812PPR_31842463.7e-124405.6
TkA01G404600PF28753RMD9_N1852246.8e-0523.5
TkA01G404600PF29070MSC6_N1892782.4e-55188.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LYZ9Arabidopsis thalianasp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g0286043.000%Swiss-ProtLow
O64624Arabidopsis thalianasp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940, chloroplastic30.700%Swiss-ProtLow

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