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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G383900
Reference: TK1151 Chr: Chr01 Coordinates: 95817314-95819525 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1550 bp · TkA01G383900|TK1151|cDNA

TTTTCGAAAAAGCACATTACTAAAGTTTTCGACTTACTCAAAATAAATAAAAAAACGGCGAAAAATAGACCAGATTACGCCCTTCCACTTTCTGCAATTCCAGACAGTTATCATTTTCGATTCACACCGCCAAAGGCATGAACAAATCCGACATGAGAAAGGCGTCAAAACATGAAGACGAGGCTGATTTGATCAGCAACTTGCCAGATCACGTTCTTCTTTTGATTCTCTCGGGCCTTCCTTATACCGAAGAAATAATC...

CDS

Download CDS FASTA

1176 bp · TkA01G383900|TK1151|CDS

ATGAACAAATCCGACATGAGAAAGGCGTCAAAACATGAAGACGAGGCTGATTTGATCAGCAACTTGCCAGATCACGTTCTTCTTTTGATTCTCTCGGGCCTTCCTTATACCGAAGAAATAATCCGAACAAGCATTTTATCCAGACGATGGAGGTATCTATGGACTTCAATTTCCTCTATGCACTTGACATATCGCCGAGGACGCTGCGAATTCGAAGAATTTGTTGATTACGTTTTGAAAAACCTATCGGTTGATTTGGA...

Protein

Download Protein FASTA

391 aa · TkA01G383900|TK1151|PROTEIN

MNKSDMRKASKHEDEADLISNLPDHVLLLILSGLPYTEEIIRTSILSRRWRYLWTSISSMHLTYRRGRCEFEEFVDYVLKNLSVDLDSFRISCWIYYSMSTIERWIHAAVMRNVKQLDLSSPSQGKSENMVLPHCASLEVLSLCFRDRRLILPRFSGFPVLRVLKLMYFELLDGDTVADFLKSCPMLEDLTLDICSLDKLDGLCISCPKLKKLRIFECHLRGCFKINCPKLVFLDLTQASNFIFERLHSLKEARIGCKFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G383900
TK1151 IDTkA01G383900
OH-1004 IDLXL04_003230
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)87.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G383900
LocationChr01:95817314-95819525 (-)
DescriptionNo functional description available
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g10400 FBD-associated F-box protein At4g10400. No verified direct reference in this release
At1g69630 F-box/LRR-repeat protein 13. No verified direct reference in this release
At1g78760 Putative F-box/FBD/LRR-repeat protein At1g78760. No verified direct reference in this release
At2g26860 FBD-associated F-box protein At2g26860. No verified direct reference in this release
At5g56370 FBD-associated F-box protein At5g56370. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003230 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT4G10400
ath:AT4G15060
ath:AT5G02700
ath:AT5G56690
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.849
Rank 1 · TkA01G383900 · TK1151
Cytoplasm0.203
Rank 2 · TkA01G383900 · TK1151
Cell membrane0.044
Rank 3 · TkA01G383900 · TK1151
Endoplasmic reticulum0.039
Rank 4 · TkA01G383900 · TK1151
Plastid0.015
Rank 5 · TkA01G383900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box19-58 aa
PF12937F-box-like19-53 aa
PF01491Frataxin_Cyay70-87 aa
PF24048LRR_NXF1-585-124 aa
PF23622LRR_At1g61320_AtMIF188-332 aa
PF23598LRR_1498-193 aa
PF29594LRR_SKP2109-199 aa
PF12799LRR_4112-120 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G383900PF00646F-box19582.5e-0834.2
TkA01G383900PF12937F-box-like19534.1e-0524.0
TkA01G383900PF01491Frataxin_Cyay70870.005717.4
TkA01G383900PF24048LRR_NXF1-5851240.03114.6
TkA01G383900PF23622LRR_At1g61320_AtMIF1883325.5e-0626.7
TkA01G383900PF23598LRR_14981930.2210.9
TkA01G383900PF29594LRR_SKP21091990.01115.8
TkA01G383900PF12799LRR_41121200.0005920.7
TkA01G383900PF01491Frataxin_Cyay1141250.005717.4
TkA01G383900PF12799LRR_41351430.0005920.7
TkA01G383900PF12799LRR_41381660.0005920.7
TkA01G383900PF12799LRR_41792030.0005920.7
TkA01G383900PF12799LRR_41872150.0005920.7
TkA01G383900PF24048LRR_NXF1-51932180.03114.6
TkA01G383900PF12799LRR_42082420.0005920.7
TkA01G383900PF24048LRR_NXF1-52262510.03114.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SV82Arabidopsis thalianasp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g1040029.500%Swiss-ProtLow
Q9FWZ1Arabidopsis thalianasp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 1328.600%Swiss-ProtLow
Q9ZV94Arabidopsis thalianasp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g7876025.900%Swiss-ProtLow
Q84X02Arabidopsis thalianasp|Q84X02|FBD7_ARATH FBD-associated F-box protein At2g2686027.900%Swiss-ProtLow
Q9FM94Arabidopsis thalianasp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g5637030.500%Swiss-ProtMedium

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