TkA01G382790 | RubberDandelionOmics

Gene overview

TkA01G382790

Reference: TK1151 Chr: Chr01 Coordinates: 95551810-95556942 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3704 bp · TkA01G382790|TK1151|cDNA

CTGGTATTTTATTTGGTGTAAATTACAAGTCGTAAAAGTTTTGAGTCTAAACAAAAGCTTGCCCTCTCAAATTCCCTCCCTCCCTTTATCAACCGGCCGGAGATCACACATTCGCCGTCTCTCCGCAGATTTTCTATTAACACTCTTCTAAATTACCCGTTCATCATCACCTCTCACTCTCATCAGCTTAAAGGGAACACAACAGCGGTCAACAGAAACCATCACCGCCTGCATCGACGATATTCTCGGCATTATCTTTT...

CDS

Download CDS FASTA

3225 bp · TkA01G382790|TK1151|CDS

ATGGCTGTCGATACAGACTTCACTTCGCTTTTTAACAGTTTGAAGGTCGAAGATCCATGGCTTCCACCTAGACCTTGGGAATCAATTCCTACAGAGAGTGGACGCTCTGTTACTTCAACATCTACGTCCTCCCCTTCAAATTCTAGACGCCTCTACGACACATCAACTGTTTCTGAGGCTAGTTTAGTAAGGTTGGCAATGAACGCTCTGCAAGGATTAGAGTCATCTCTTACAAGCATTGACAGACTATGCACAATATT...

Protein

Download Protein FASTA

1074 aa · TkA01G382790|TK1151|PROTEIN

MAVDTDFTSLFNSLKVEDPWLPPRPWESIPTESGRSVTSTSTSSPSNSRRLYDTSTVSEASLVRLAMNALQGLESSLTSIDRLCTIFRSDPTDRTFHRIPSLWNQSVSTLALEKILRSLGCMGCEVFFLYKFINHFTNLNSDEASSSHPPYSLVNQAFAVAIGDVLEGYIAALDTLSSSVSLRRSSSFNDSMSGCLSSVGHSEITLLEVFLHTKELRTQIEVIGSICNVHDIALSFSHSPLEDLDTQTKFSEFPRGGNLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G382790`
TK1151 ID	TkA01G382790
OH-1004 ID	LXL04_003243
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G382790

Location Chr01:95551810-95556942 (-)

Description Similar to Tubgcp6: Gamma-tubulin complex component 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g17410`	Gamma-tubulin complex is necessary for microtubule nucleation at the microtubule organizing centers (MTOCs).	A mutation in the Arabidopsis gamma-tubulin-containing complex causes helical growth and abnormal microtubule branching.2009 · DOI: 10.1242/jcs.044131 Microtubule and katanin-dependent dynamics of microtubule nucleation complexes in the acentrosomal Arabidopsis cortical array.2010 · DOI: 10.1038/ncb2110

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003243 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0007020 microtubule nucleation Biological Process

GO:0009624 response to nematode Biological Process

GO:0031122 cytoplasmic microtubule organization Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0000922 spindle pole Cellular Component

GO:0000930 gamma-tubulin complex Cellular Component

GO:0000931 gamma-tubulin ring complex Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005813 centrosome Cellular Component

KEGG gene cross-reference

ath:AT3G53760

hsa:85378

mmu:328580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.556

Rank 1 · TkA01G382790 · TK1151

Nucleus0.236

Rank 2 · TkA01G382790 · TK1151

Golgi apparatus0.199

Rank 3 · TkA01G382790 · TK1151

Lysosome / Vacuole0.117

Rank 4 · TkA01G382790 · TK1151

Cell membrane0.110

Rank 5 · TkA01G382790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17681GCP_N_terminal67-384 aa

PF23084KH_PARP14_1419-454 aa

PF04130GCP_C_terminal754-1059 aa

PF23084KH_PARP14_1971-995 aa

PF17681GCP_N_terminal983-1035 aa

PF23084KH_PARP14_11036-1070 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G382790	`PF17681`	GCP_N_terminal	67	384	4e-26	93.0
TkA01G382790	`PF23084`	KH_PARP14_1	419	454	0.022	15.8
TkA01G382790	`PF04130`	GCP_C_terminal	754	1059	8.9e-57	193.6
TkA01G382790	`PF23084`	KH_PARP14_1	971	995	0.022	15.8
TkA01G382790	`PF17681`	GCP_N_terminal	983	1035	4e-26	93.0
TkA01G382790	`PF23084`	KH_PARP14_1	1036	1070	0.022	15.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5H9`	Arabidopsis thaliana	sp\|Q9C5H9\|GACP2_ARATH Gamma-tubulin complex component 2	21.600%	Swiss-Prot	Low

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