TkA01G361830 | RubberDandelionOmics

Gene overview

TkA01G361830

Reference: TK1151 Chr: Chr01 Coordinates: 89919652-89920291 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

480 bp · TkA01G361830|TK1151|cDNA

ATGTTCGATTTAGTATCTATGAAGAGATCAATTTCATTTTCGGAAGATCAGGTCAACGGAGAGGGTGATGTCGATGGTGGCAAGATGAAAAAGAAGATCGGGGAAGATCTGGTACCAGATACAGAGATTTTAGGTGAGGAGGACTCGGAGAACTCGGAGATGGCGGGCAACCTCATCATCATCTCAATTGTCACTCTCACCATAAGGATCAGGTTATTCACCATCCTCGATCAAACACAAACCAGAGCTCCATTCGTCGT...

CDS

Download CDS FASTA

480 bp · TkA01G361830|TK1151|CDS

ATGTTCGATTTAGTATCTATGAAGAGATCAATTTCATTTTCGGAAGATCAGGTCAACGGAGAGGGTGATGTCGATGGTGGCAAGATGAAAAAGAAGATCGGGGAAGATCTGGTACCAGATACAGAGATTTTAGGTGAGGAGGACTCGGAGAACTCGGAGATGGCGGGCAACCTCATCATCATCTCAATTGTCACTCTCACCATAAGGATCAGGTTATTCACCATCCTCGATCAAACACAAACCAGAGCTCCATTCGTCGT...

Protein

Download Protein FASTA

159 aa · TkA01G361830|TK1151|PROTEIN

MFDLVSMKRSISFSEDQVNGEGDVDGGKMKKKIGEDLVPDTEILGEEDSENSEMAGNLIIISIVTLTIRIRLFTILDQTQTRAPFVVTNDTYQLEFMGVTRNRAGNQLALSMQQIEETGRGVLVYLRGHEGRGIGLGHKLRAYNLIRQIGNHEAFRLEF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G361830`
TK1151 ID	TkA01G361830
OH-1004 ID	LXL04_021396
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	74.200
Protein coverage (%)	TK1151 100.000 / OH-1004 84.211 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G361830

Location Chr01:89919652-89920291 (-)

Description Similar to RIBA1: Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64300`	Involved in riboflavin biosynthesis.	Deficiency in riboflavin biosynthesis affects tetrapyrrole biosynthesis in etiolated Arabidopsis tissue.2012 · DOI: 10.1007/s11103-011-9846-1 Arabidopsis RIBA proteins: two out of three isoforms have lost their bifunctional activity in riboflavin biosynthesis.2012 · DOI: 10.3390/ijms131114086
`At5g59750`	Involved in riboflavin biosynthesis.	Arabidopsis RIBA proteins: two out of three isoforms have lost their bifunctional activity in riboflavin biosynthesis.2012 · DOI: 10.3390/ijms131114086

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0481950`	Involved in riboflavin biosynthesis.	No verified direct reference in this release
`Os02g0572400`	Involved in riboflavin biosynthesis.	No verified direct reference in this release
`Os05g0460600`	Involved in riboflavin biosynthesis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021396 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009231 riboflavin biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0003935 GTP cyclohydrolase II activity Molecular Function

GO:0005525 GTP binding Molecular Function

GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT5G59750

ath:AT5G64300

dosa:Os02g0572400

dosa:Os05g0460600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.360

Rank 1 · TkA01G361830 · TK1151

Cytoplasm0.343

Rank 2 · TkA01G361830 · TK1151

Mitochondrion0.173

Rank 3 · TkA01G361830 · TK1151

Cell membrane0.088

Rank 4 · TkA01G361830 · TK1151

Plastid0.070

Rank 5 · TkA01G361830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00925GTP_cyclohydro294-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G361830	`PF00925`	GTP_cyclohydro2	94	148	1.3e-13	51.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P47924`	Arabidopsis thaliana	sp\|P47924\|RIBA1_ARATH Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic	82.400%	Swiss-Prot	Low
`Q9FN89`	Arabidopsis thaliana	sp\|Q9FN89\|RIBA3_ARATH Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic	70.600%	Swiss-Prot	Low
`Q6Z234`	Oryza sativa subsp. japonica	sp\|Q6Z234\|RIBA1_ORYSJ Probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic	74.500%	Swiss-Prot	Low
`Q0E079`	Oryza sativa subsp. japonica	sp\|Q0E079\|RIBA2_ORYSJ Probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic	70.600%	Swiss-Prot	Low
`Q6L506`	Oryza sativa subsp. japonica	sp\|Q6L506\|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic	70.600%	Swiss-Prot	Low

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