TkA01G357890 | RubberDandelionOmics

Gene overview

TkA01G357890

Reference: TK1151 Chr: Chr01 Coordinates: 88896851-88898919 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

441 bp · TkA01G357890|TK1151|cDNA

ATGGCAGCATCGAAGAGCTACTATGCTAGACAAAACTACCGGTTCCTTTCCAACGAAAGGAACAGTGCCGTCGGATCGGATTCATTGTTTAAGCTGAACGGATCGGATGTCTGGAACGTTTCCGTGTCTCCTGAGTCGCGTAAGACGGTGATGGATTCTCGGATCGGTCAGAGTTCTTCATCGGTGGCGGTGATGCAAGGAGAGGTCGGAGGAACGGTGTCGTCGCTGCCGGTCAATGTTCCGGACTGGTCTAAGATACT...

CDS

Download CDS FASTA

441 bp · TkA01G357890|TK1151|CDS

ATGGCAGCATCGAAGAGCTACTATGCTAGACAAAACTACCGGTTCCTTTCCAACGAAAGGAACAGTGCCGTCGGATCGGATTCATTGTTTAAGCTGAACGGATCGGATGTCTGGAACGTTTCCGTGTCTCCTGAGTCGCGTAAGACGGTGATGGATTCTCGGATCGGTCAGAGTTCTTCATCGGTGGCGGTGATGCAAGGAGAGGTCGGAGGAACGGTGTCGTCGCTGCCGGTCAATGTTCCGGACTGGTCTAAGATACT...

Protein

Download Protein FASTA

146 aa · TkA01G357890|TK1151|PROTEIN

MAASKSYYARQNYRFLSNERNSAVGSDSLFKLNGSDVWNVSVSPESRKTVMDSRIGQSSSSVAVMQGEVGGTVSSLPVNVPDWSKILKEDYIENRRRDSDDDDFDDDYSCCDGDRIPPYEFLARFLARTRMASFSVHEGIGRTLNH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G357890`
TK1151 ID	TkA01G357890
OH-1004 ID	LXL04_003454
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G357890

Location Chr01:88896851-88898919 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28400`	Protein S40-4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003454 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0010150 leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G28400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.486

Rank 1 · TkA01G357890 · TK1151

Cytoplasm0.378

Rank 2 · TkA01G357890 · TK1151

Cell membrane0.105

Rank 3 · TkA01G357890 · TK1151

Mitochondrion0.078

Rank 4 · TkA01G357890 · TK1151

Endoplasmic reticulum0.064

Rank 5 · TkA01G357890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12952DUF38416-100 aa

PF04520Senescence_reg19-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G357890	`PF12952`	DUF3841	6	100	0.18	12.2
TkA01G357890	`PF04520`	Senescence_reg	19	144	2.6e-19	71.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SKN0`	Arabidopsis thaliana	sp\|Q9SKN0\|S404_ARATH Protein S40-4	39.900%	Swiss-Prot	Medium

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