Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1086 bp · TkA01G357240|TK1151|cDNA
TCACATTCATATATATAAATAAACAACCAGTCTGACATTTCAATCAACAAAACCTCTCGAAGAAAAACCCAGTTTTAGTTGGTCCAGTTCATCATTCAGTTTCAAGAAAAATATTAAATGAATATGGAAGACGGTTTGAATCTCACACTGGGATTGCCCGGAACAGCCGAATCCGATCAAGAATCAACCGTTACATGTTTCAAGAACATAAACAAACGATCGCAGCCGGAAACCACCACCGATGACTGCACGGAATCCAA...
570 bp · TkA01G357240|TK1151|CDS
ATGAATATGGAAGACGGTTTGAATCTCACACTGGGATTGCCCGGAACAGCCGAATCCGATCAAGAATCAACCGTTACATGTTTCAAGAACATAAACAAACGATCGCAGCCGGAAACCACCACCGATGACTGCACGGAATCCAAGGGAAGTTCCCAACACAAGGAATCATATATCGAAACTTCACCTGCAGCCAAATCGCAAGTGGTCGGATGGCCGCCGGTGAGGAACTACCGGAGGAATAACTTTCAGGCGAAAAAGCT...
Protein
Download Protein FASTA189 aa · TkA01G357240|TK1151|PROTEIN
MNMEDGLNLTLGLPGTAESDQESTVTCFKNINKRSQPETTTDDCTESKGSSQHKESYIETSPAAKSQVVGWPPVRNYRRNNFQAKKLESESGMYVKVSMDGAPYLRKIDLKVYKGYSELLKALESMFKLTIGAYSERDGYKGSEFAPTYEDKDGDWMLVGDVPWEMFMLSCKRMRIMKGSEAKGLGCNL
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G357240 |
|---|---|
| TK1151 ID | TkA01G357240 |
| OH-1004 ID | LXL04_003457 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 85.185 / OH-1004 59.630Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G357240 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:88708059-88709443 (+) | |||||||||
| Description | Similar to IAA3: Auxin-responsive protein IAA3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009733 response to auxin Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0005634 nucleus Cellular Component GO:0000976 transcription cis-regulatory region binding Molecular Function GO:0003677 DNA binding Molecular Function GO:0003700 DNA-binding transcription factor activity Molecular Function GO:0042802 identical protein binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G04240 ath:AT5G43700 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02309AUX_IAA7-186 aaPF23237HYR_4C16-46 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G357240 | PF02309 | AUX_IAA | 7 | 186 | 9.8e-59 | 199.5 |
| TkA01G357240 | PF23237 | HYR_4C | 16 | 46 | 0.1 | 13.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.