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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G355460
Reference: TK1151 Chr: Chr01 Coordinates: 88262556-88265100 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1667 bp · TkA01G355460|TK1151|cDNA

TTTCAACGGGTGTATATAGAATCCTCCTCCAAAAAGTGGTGTGCTCAAAACGGACGATCCGAAGAAGACACCTCTCTCCTCTCACTCTCTTTCTCTCTCTCTAGAACCTTCGTGTTTAGGTTGATGAATTCCCCACCCCTTTCTTTTCCTCTCTTTTTGCAGCATAACGAGATGGTATTATGACATTAAAGAACGAAAAGCTATGTTCTTTATGCCCAGCTTTTTGTTAAATTTTCAACTAATTTGTAATTAATATAATC...

CDS

Download CDS FASTA

1104 bp · TkA01G355460|TK1151|CDS

ATGGCTGTGATTGAGAATGGTGGGTCGAATAATCACGTCGAACCGAACGACGTCGATCAGTCAAAATCCTTGATTTCGAAATCAAGGTCAAGTGATCAGCACCAGAGTTCTGATCAGCAGAAGACAGCAATTAACGGAAATGGTAATCTGGTATACGGCAACAACGGTGTCTCAAACAATCATCATCAGCATCAGATGGCGGTGAATGGCGTCGATCATCATAACCAGGAAGAAGAAGAAGAAGAGGACGGGTTTAAAAA...

Protein

Download Protein FASTA

367 aa · TkA01G355460|TK1151|PROTEIN

MAVIENGGSNNHVEPNDVDQSKSLISKSRSSDQHQSSDQQKTAINGNGNLVYGNNGVSNNHHQHQMAVNGVDHHNQEEEEEEDGFKKEMRDLAEMLSNLNPMAAEFVPPSLSNNYTRPLLVPPSPTAHFGYTAINNFLLQTNGTTFTNSNGTTRLKKSSFSHGKRRMNSRTSMAQREDVIKRTVYVSDIDHQVTEEQLAALFIGCGQVVDCRVCGDPNSVLRFAFIEFTDEEGARNALALGGTMLGYYPVRVLPSKTAIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G355460
TK1151 IDTkA01G355460
OH-1004 IDLXL04_035395
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)83.200
Protein coverage (%)TK1151 77.657 / OH-1004 70.663
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G355460
LocationChr01:88262556-88265100 (+)
DescriptionSimilar to CID11: Polyadenylate-binding protein-interacting protein 11
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g10610 Binds nucleotic acids in vitro.
A new Arabidopsis nucleic-acid-binding protein gene is highly expressed in dividing cells during development.1997 · DOI: 10.1023/a:1005834402536
At1g32790 Polyadenylate-binding protein-interacting protein 11. No verified direct reference in this release
At3g49390 Polyadenylate-binding protein-interacting protein 10. No verified direct reference in this release
At3g14450 Polyadenylate-binding protein-interacting protein 9. No verified direct reference in this release
At1g53650 Polyadenylate-binding protein-interacting protein 8. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035395 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G32790
ath:AT1G53650
ath:AT3G14450
ath:AT3G49390
ath:AT4G10610
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.550
Rank 1 · TkA01G355460 · TK1151
Nucleus0.438
Rank 2 · TkA01G355460 · TK1151
Cell membrane0.134
Rank 3 · TkA01G355460 · TK1151
Endoplasmic reticulum0.039
Rank 4 · TkA01G355460 · TK1151
Lysosome / Vacuole0.031
Rank 5 · TkA01G355460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07145PAM295-110 aa
PF16842RRM_occluded182-244 aa
PF23085RRM_PARP14_3182-236 aa
PF24572RBD_RDR6182-213 aa
PF00076RRM_1184-246 aa
PF09063Phage_coat201-201 aa
PF24572RBD_RDR6220-240 aa
PF09063Phage_coat274-321 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G355460PF07145PAM2951104.8e-0523.5
TkA01G355460PF16842RRM_occluded1822440.03314.8
TkA01G355460PF23085RRM_PARP14_31822360.04614.5
TkA01G355460PF24572RBD_RDR61822130.2112.4
TkA01G355460PF00076RRM_11842464.2e-2381.7
TkA01G355460PF09063Phage_coat2012010.212.3
TkA01G355460PF24572RBD_RDR62202400.2112.4
TkA01G355460PF09063Phage_coat2743210.212.3
TkA01G355460PF16842RRM_occluded2783310.03314.8
TkA01G355460PF23085RRM_PARP14_32793260.04614.5
TkA01G355460PF00076RRM_12813484.2e-2381.7
TkA01G355460PF24572RBD_RDR62813110.2112.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S7N9Arabidopsis thalianasp|Q9S7N9|CID12_ARATH Polyadenylate-binding protein-interacting protein 1262.500%Swiss-ProtHigh
Q9LPI5Arabidopsis thalianasp|Q9LPI5|CID11_ARATH Polyadenylate-binding protein-interacting protein 1169.400%Swiss-ProtHigh
Q9SG10Arabidopsis thalianasp|Q9SG10|CID10_ARATH Polyadenylate-binding protein-interacting protein 1069.200%Swiss-ProtHigh
Q9LRR6Arabidopsis thalianasp|Q9LRR6|CID9_ARATH Polyadenylate-binding protein-interacting protein 961.600%Swiss-ProtHigh
Q9C8M0Arabidopsis thalianasp|Q9C8M0|CID8_ARATH Polyadenylate-binding protein-interacting protein 862.200%Swiss-ProtHigh

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