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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G332340
Reference: TK1151 Chr: Chr01 Coordinates: 82569534-82576025 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5030 bp · TkA01G332340|TK1151|cDNA

TACTCTTCAAGACTTCAACGATGTGTATGAAAGAAAGGGGAAAAGGGAAAAGGGAAAGGCCGCAGCGGTCTTGTAGAGCTCTTTTAATCGGATACACGACTCGACTCGACTCGACTCGACATAGCCAAAATCGCGATCTGGTCCAAAACCCTCCGCTTTCCCCTTCCAGTTTCTATATATAGAAGCGAAACCGTACAGGTAGTCAGTCGACTCATGCATTTCTAGAGAAAGAAAGTGGTTGATGCTAGTCTATTCCGTAT...

CDS

Download CDS FASTA

4344 bp · TkA01G332340|TK1151|CDS

ATGGAGTTTGTGGGGAGAACAGTGAGGAAAGAATTTAAAGGATTTGGGGTTTTCTCCGGAGTCGTGAAATCATACGATTCCTCATCTGGTTTCTTCGAGATCGGCTACGAAGATGGCGATTCTGAAGAAATTGATTTCTCCGAGTTGGCTGCTCTTTTGGAACTAGATGGAGTTATTATGGAGCATTCCCCATCTCTGCTGGCTAAGCAATCGTCCAGGGTTGGGAAAAGACCTAAAAAGAGGCGTAGGGTTCTTTGCTC...

Protein

Download Protein FASTA

1447 aa · TkA01G332340|TK1151|PROTEIN

MEFVGRTVRKEFKGFGVFSGVVKSYDSSSGFFEIGYEDGDSEEIDFSELAALLELDGVIMEHSPSLLAKQSSRVGKRPKKRRRVLCSSISGNENEFSSSLGNAAVVDDSNLDSVEGELVSEVNIVNNVTKKLGISSNDNNDVGSNCENLTFKDVGLNVNSRVHDLDQNGKGNADEIKLNSDLDDENDPESKLKDLVDDSVKKEQILDLNLDLDYSQNKNQDIDLGGYVKGENSGGNETMNTSSTDVSLDLDPHGNLGSAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G332340
TK1151 IDTkA01G332340
OH-1004 IDLXL04_003588
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G332340
LocationChr01:82569534-82576025 (-)
DescriptionSimilar to PTM: DDT domain-containing protein PTM
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g35210 Membrane-bound transcription factor required for the plastid-to-nucleus retrograde signaling. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003588 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006508 proteolysis Biological Process
GO:0010019 chloroplast-nucleus signaling pathway Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0034728 nucleosome organization Biological Process
GO:0045824 negative regulation of innate immune response Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT5G35210
cel:CELE_F26H11.2
dme:Dmel_CG32346
hsa:2186
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970
Rank 1 · TkA01G332340 · TK1151
Cytoplasm0.077
Rank 2 · TkA01G332340 · TK1151
Cell membrane0.028
Rank 3 · TkA01G332340 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA01G332340 · TK1151
Plastid0.012
Rank 5 · TkA01G332340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21743PTM_DIR17_Tudor5-53 aa
PF02791DDT359-413 aa
PF15612WHIM1467-497 aa
PF00628PHD546-587 aa
PF30811PHD_UBR7-like552-589 aa
PF27108PHD_Pygo552-591 aa
PF13831PHD_2554-588 aa
PF21257PHD_ash2p_like558-574 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G332340PF21743PTM_DIR17_Tudor5535.5e-1658.8
TkA01G332340PF02791DDT3594133e-1660.0
TkA01G332340PF15612WHIM14674970.001418.9
TkA01G332340PF00628PHD5465873.5e-0937.2
TkA01G332340PF30811PHD_UBR7-like5525890.08713.5
TkA01G332340PF27108PHD_Pygo5525911.89.4
TkA01G332340PF13831PHD_25545880.003317.6
TkA01G332340PF21257PHD_ash2p_like5585742.19.1
TkA01G332340PF02008zf-CXXC7727940.1912.5
TkA01G332340PF01166TSC22100310430.2612.2
TkA01G332340PF24294Chromo_PTM103311162e-2692.5
TkA01G332340PF02008zf-CXXC114611730.1912.5
TkA01G332340PF27108PHD_Pygo115111771.89.4
TkA01G332340PF00628PHD115211943.5e-0937.2
TkA01G332340PF30811PHD_UBR7-like116311950.08713.5
TkA01G332340PF13831PHD_2116511770.003317.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JYC8Arabidopsis thalianasp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM27.600%Swiss-ProtLow

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