TkA01G321980 | RubberDandelionOmics

Gene overview

TkA01G321980

Reference: TK1151 Chr: Chr01 Coordinates: 80042689-80046480 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2088 bp · TkA01G321980|TK1151|cDNA

GGGTTTTAACTTTTAAGTAGCTAAGTACTAACGAAGAAGTAACTATGATCTGTTTCACACACACTCACACAACCCTCGTTTCTCTCTCTTTCTCTCTCTCCCTAACTTTTGAATTTTATTTTCGTTTCTTTTTCCAACTTTTTCACCAGAATGCTTTACTTTGTTCCCAATCTTCTTCCTCCATCTCTATCGTCTTAGATTCTCTATCAGTGCGACTCTGTGTTCGGGTTCTTCACTCAAGTTTCATCAATGGCGGACAT...

CDS

Download CDS FASTA

1560 bp · TkA01G321980|TK1151|CDS

ATGGCGGACATTAGTCACCCGCCCATGGAACAACTGCAAGACCTCGAGTACTGTATCGACTCCAATCCGCCATGGCCCGAAACAATTTTGTTAGCATTTCAAAACTACATTCTTATGCTTGGAACAAGTGTAATGATCCCTTCACTACTCGTACCTTTAATGGGTGGATCAGATGGTGACAAGGCTCGCGTTATTCAAACATTACTATTTGTAGCCGGAATCAACACACTTCTTCAAACGTTGTTTGGAACCAGATTGCC...

Protein

Download Protein FASTA

519 aa · TkA01G321980|TK1151|PROTEIN

MADISHPPMEQLQDLEYCIDSNPPWPETILLAFQNYILMLGTSVMIPSLLVPLMGGSDGDKARVIQTLLFVAGINTLLQTLFGTRLPAVVGGSFAYVMPILYIINDSSLQRIPDHHDRFIQTMRAIQGALIVASSIQIVAGYSQLWGLFSRFFSPLGMVPVVGLVGLGLFQRGFPMLGNCVEIGLPMLLLVIGVSQYLKHTKLLKDVPIFERFPLLICISIIWIYSIILTASGAYRNRPNATQVSCRTDRANLISTAPWF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G321980`
TK1151 ID	TkA01G321980
OH-1004 ID	LXL04_001863
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G321980

Location Chr01:80042689-80046480 (-)

Description Similar to NAT1: Nucleobase-ascorbate transporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g05760`	Nucleobase-ascorbate transporter 1.	No verified direct reference in this release
`At2g34190`	Nucleobase-ascorbate transporter 2.	No verified direct reference in this release
`At5g62890`	Nucleobase-ascorbate transporter 6.	No verified direct reference in this release
`At2g26510`	Nucleobase-ascorbate transporter 3.	No verified direct reference in this release
`At1g60030`	Nucleobase-ascorbate transporter 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001863 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0035344 hypoxanthine transport Biological Process

GO:0098702 adenine import across plasma membrane Biological Process

GO:0098710 guanine import across plasma membrane Biological Process

GO:0098721 uracil import across plasma membrane Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G60030

ath:AT2G05760

ath:AT2G26510

ath:AT2G34190

ath:AT5G62890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.784

Rank 1 · TkA01G321980 · TK1151

Cytoplasm0.110

Rank 2 · TkA01G321980 · TK1151

Lysosome / Vacuole0.084

Rank 3 · TkA01G321980 · TK1151

Endoplasmic reticulum0.060

Rank 4 · TkA01G321980 · TK1151

Mitochondrion0.037

Rank 5 · TkA01G321980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00860Xan_ur_permease27-432 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G321980	`PF00860`	Xan_ur_permease	27	432	4.6e-67	227.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SHZ3`	Arabidopsis thaliana	sp\|Q9SHZ3\|NAT1_ARATH Nucleobase-ascorbate transporter 1	85.000%	Swiss-Prot	High
`Q94C70`	Arabidopsis thaliana	sp\|Q94C70\|NAT2_ARATH Nucleobase-ascorbate transporter 2	70.100%	Swiss-Prot	High
`Q27GI3`	Arabidopsis thaliana	sp\|Q27GI3\|NAT6_ARATH Nucleobase-ascorbate transporter 6	59.400%	Swiss-Prot	High
`Q8GZD4`	Arabidopsis thaliana	sp\|Q8GZD4\|NAT3_ARATH Nucleobase-ascorbate transporter 3	59.100%	Swiss-Prot	High
`Q0WPE9`	Arabidopsis thaliana	sp\|Q0WPE9\|NAT7_ARATH Nucleobase-ascorbate transporter 7	57.300%	Swiss-Prot	High

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