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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G298270
Reference: TK1151 Chr: Chr01 Coordinates: 74238443-74240399 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1835 bp · TkA01G298270|TK1151|cDNA

AAAAAATTGTAAAGAAATGAGAATTTTATGTAAACTAATGGAGTTTTGTCGAAATCAATCTTTAATCAACTCCGAAACCAACAGCTTCGTCTTATTCCACCACTTCGGTGTCCAATCTTCGCTATCGGACCTAGGGTATATGATTGTGTTCATCCTTCAATTCTTTTGTTCCCGGCTAAAAGCAGAAACGCCTTCAAGAAAACCCCATTTCAGGGTTTCAATCTCAACGATTATCATCGAAACAAATGACTAAAGATTAC...

CDS

Download CDS FASTA

1416 bp · TkA01G298270|TK1151|CDS

ATGACTAAAGATTACGTGATAAACCCAGATAGATTCAAGAATTTCTTCAACGAATTGGACACTCGTAGAACCCTGCTCACAACTGTCACTGACCTCAACAACAAATTAGTAAATCATTTCATTTCTTTAGAAGAAACCCTCAACCAAAAATCACTAACGTTAGATACCCAGATCGAGAAATTCAAGCAAGATACCGAGAAAAACCTCGAATCTCTTCGGATTCGCGAGAGTGCTCTTCCTGAAAAGGAAGTTACGTTGGC...

Protein

Download Protein FASTA

471 aa · TkA01G298270|TK1151|PROTEIN

MTKDYVINPDRFKNFFNELDTRRTLLTTVTDLNNKLVNHFISLEETLNQKSLTLDTQIEKFKQDTEKNLESLRIRESALPEKEVTLAARVQQLEYSAINDIKNGSISDGKKKRMSDLFRMWFRRMDSKGLMEYLLANRKKYEVLRMETAMAAEEAIDLPAFVLEAVEDYLELKISGKFGGLAPTRCACGILIQAAFPIPPGGEPHAGGGVSSKLKERSAMVMEKWKGVLGSGGGGGGPGYREDIVASGEAILFLTMVMGF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G298270
TK1151 IDTkA01G298270
OH-1004 IDLXL04_003694
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.500
Protein coverage (%)TK1151 94.055 / OH-1004 93.830
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G298270
LocationChr01:74238443-74240399 (-)
DescriptionSimilar to FRL4A: FRIGIDA-like protein 4a
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003694 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009908 flower development Biological Process
GO:0030154 cell differentiation Biological Process
GO:0005634 nucleus Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT3G22440
ath:AT4G14900
ath:AT5G16320
ath:AT5G48385
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.807
Rank 1 · TkA01G298270 · TK1151
Cytoplasm0.180
Rank 2 · TkA01G298270 · TK1151
Cell membrane0.065
Rank 3 · TkA01G298270 · TK1151
Endoplasmic reticulum0.046
Rank 4 · TkA01G298270 · TK1151
Plastid0.022
Rank 5 · TkA01G298270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13339AATF-Che19-70 aa
PF10211Ax_dynein_light22-99 aa
PF26022CC_Liprin_beta31-102 aa
PF05919Mitovir_RNA_pol36-71 aa
PF27823SCD2_helical_N56-96 aa
PF16799VGPC1_C84-96 aa
PF07899Frigida119-395 aa
PF26211Phage_phiTE_072119-119 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G298270PF13339AATF-Che19703.09.1
TkA01G298270PF10211Ax_dynein_light22991.79.3
TkA01G298270PF26022CC_Liprin_beta311020.4511.5
TkA01G298270PF05919Mitovir_RNA_pol36710.02714.2
TkA01G298270PF27823SCD2_helical_N56963.98.5
TkA01G298270PF16799VGPC1_C84960.1712.6
TkA01G298270PF07899Frigida1193951.7e-54185.8
TkA01G298270PF26211Phage_phiTE_0721191190.8110.4
TkA01G298270PF05919Mitovir_RNA_pol2573990.02714.2
TkA01G298270PF13339AATF-Che12963673.09.1
TkA01G298270PF26211Phage_phiTE_0723453930.8110.4
TkA01G298270PF27823SCD2_helical_N3543893.98.5
TkA01G298270PF26022CC_Liprin_beta3603950.4511.5
TkA01G298270PF10211Ax_dynein_light3693961.79.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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