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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G282830
Reference: TK1151 Chr: Chr01 Coordinates: 70656659-70657066 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

408 bp · TkA01G282830|TK1151|cDNA

ATGCCGATACAGGTTGGCGATAAAGTTGAAGTTATAGGCTTCGAACCAGGCTTCGAACATTCCTATTTTGCAGGAAAAGTAATCAGGACTTATAATGATACTTTTGAAGTTCAGTATGAGGATCTAGTTGTTACGAAAGGCGGAGAACAAATCATTGAAATGATAGACGCTGCACATGTGAGACCCTATCCTCCACACATCGATTACAACATTGATAATTTTGAGAGAGGAGATGTAGTAGATGTTTTGTACAAAGACGG...

CDS

Download CDS FASTA

408 bp · TkA01G282830|TK1151|CDS

ATGCCGATACAGGTTGGCGATAAAGTTGAAGTTATAGGCTTCGAACCAGGCTTCGAACATTCCTATTTTGCAGGAAAAGTAATCAGGACTTATAATGATACTTTTGAAGTTCAGTATGAGGATCTAGTTGTTACGAAAGGCGGAGAACAAATCATTGAAATGATAGACGCTGCACATGTGAGACCCTATCCTCCACACATCGATTACAACATTGATAATTTTGAGAGAGGAGATGTAGTAGATGTTTTGTACAAAGACGG...

Protein

Download Protein FASTA

135 aa · TkA01G282830|TK1151|PROTEIN

MPIQVGDKVEVIGFEPGFEHSYFAGKVIRTYNDTFEVQYEDLVVTKGGEQIIEMIDAAHVRPYPPHIDYNIDNFERGDVVDVLYKDGWWDGIIHDVFYNMNNKKRYEVFFNYMPEKNNMIAINLKRSDLINSGWW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G282830
TK1151 IDTkA01G282830
OH-1004 IDLXL04_003731
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.300
Protein coverage (%)TK1151 85.926 / OH-1004 15.467
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G282830
LocationChr01:70656659-70657066 (-)
DescriptionSimilar to DUF6: DUF724 domain-containing protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003731 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0000775 chromosome, centromeric region Cellular Component
GO:0000792 heterochromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0042393 histone binding Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0140566 histone reader activity Molecular Function
KEGG gene cross-reference
ath:AT1G09320
ath:AT1G26540
ath:AT2G47230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.674
Rank 1 · TkA01G282830 · TK1151
Cytoplasm0.466
Rank 2 · TkA01G282830 · TK1151
Endoplasmic reticulum0.033
Rank 3 · TkA01G282830 · TK1151
Cell membrane0.030
Rank 4 · TkA01G282830 · TK1151
Mitochondrion0.028
Rank 5 · TkA01G282830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00018SH3_12-13 aa
PF14604SH3_92-13 aa
PF07653SH3_23-13 aa
PF05641Agenet6-65 aa
PF23327Chromo_MORC2_6th6-33 aa
PF21743PTM_DIR17_Tudor18-41 aa
PF18359Tudor_518-34 aa
PF26011Beta-barrel_RND_rel19-33 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G282830PF00018SH3_12130.3411.3
TkA01G282830PF14604SH3_92131.19.9
TkA01G282830PF07653SH3_23130.009916.3
TkA01G282830PF05641Agenet6652.5e-1867.0
TkA01G282830PF23327Chromo_MORC2_6th6330.07213.6
TkA01G282830PF21743PTM_DIR17_Tudor18410.08313.4
TkA01G282830PF18359Tudor_518340.2811.7
TkA01G282830PF26011Beta-barrel_RND_rel19330.0215.5
TkA01G282830PF26011Beta-barrel_RND_rel701130.0215.5
TkA01G282830PF07653SH3_273920.009916.3
TkA01G282830PF00018SH3_174940.3411.3
TkA01G282830PF14604SH3_974931.19.9
TkA01G282830PF23327Chromo_MORC2_6th751150.07213.6
TkA01G282830PF05641Agenet771132.5e-1867.0
TkA01G282830PF21743PTM_DIR17_Tudor82870.08313.4
TkA01G282830PF18359Tudor_5851100.2811.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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