TkA01G273420 | RubberDandelionOmics

Gene overview

TkA01G273420

Reference: TK1151 Chr: Chr01 Coordinates: 68454753-68455595 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

765 bp · TkA01G273420|TK1151|cDNA

ATGGCGGGTTTAGATTTAAGCACAGCTTCTCATTATATCCATCATCAACTCCATCGTTCTGAGCTGCAACTCCCAACCAGTCAACCACACCAGCTTTTCTCAAACAACTTTCAACATCAGGAGGAGGAGGAGGGTGGTGGTCGGCGGCCAAGAGGTCGTCCACCAGGATCAAAGAACAAGCCCAAGCCACCGGTGATTATTACAAGAGAGAGTGCCAACACTCTCAGAGCTCATATACTGGAAATCAGTAACGGGTATGA...

CDS

Download CDS FASTA

765 bp · TkA01G273420|TK1151|CDS

ATGGCGGGTTTAGATTTAAGCACAGCTTCTCATTATATCCATCATCAACTCCATCGTTCTGAGCTGCAACTCCCAACCAGTCAACCACACCAGCTTTTCTCAAACAACTTTCAACATCAGGAGGAGGAGGAGGGTGGTGGTCGGCGGCCAAGAGGTCGTCCACCAGGATCAAAGAACAAGCCCAAGCCACCGGTGATTATTACAAGAGAGAGTGCCAACACTCTCAGAGCTCATATACTGGAAATCAGTAACGGGTATGA...

Protein

Download Protein FASTA

254 aa · TkA01G273420|TK1151|PROTEIN

MAGLDLSTASHYIHHQLHRSELQLPTSQPHQLFSNNFQHQEEEEGGGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEISNGYDVFESIATYARRRQRGICILSGSGTVTNVSLRQASAPGSVIALQGRLEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGELTAAGPVIVIASSFTNVAYERLPLEEDETPVDHRLQIQPPSSHGNENAGDPSSGPPFFNLPADGWGEGNSSGGRSNNNNPF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G273420`
TK1151 ID	TkA01G273420
OH-1004 ID	LXL04_003773
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G273420

Location Chr01:68454753-68455595 (+)

Description Similar to AHL23: AT-hook motif nuclear-localized protein 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17800`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release
`At2g35270`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release
`At4g22810`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release
`At2g45430`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	Over-expression of an AT-hook gene, AHL22, delays flowering and inhibits the elongation of the hypocotyl in Arabidopsis thaliana.2009 · DOI: 10.1007/s11103-009-9507-9 The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis.2012 · DOI: 10.1074/jbc.m111.318477
`At4g12050`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003773 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0045824 negative regulation of innate immune response Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048440 carpel development Biological Process

GO:0048653 anther development Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

KEGG gene cross-reference

ath:AT1G76500

ath:AT2G35270

ath:AT4G14465

ath:AT4G17800

ath:AT4G22810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.921

Rank 1 · TkA01G273420 · TK1151

Cytoplasm0.160

Rank 2 · TkA01G273420 · TK1151

Cell membrane0.033

Rank 3 · TkA01G273420 · TK1151

Endoplasmic reticulum0.027

Rank 4 · TkA01G273420 · TK1151

Plastid0.015

Rank 5 · TkA01G273420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03479PCC70-188 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G273420	`PF03479`	PCC	70	188	9.5e-31	107.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23620`	Arabidopsis thaliana	sp\|O23620\|AHL23_ARATH AT-hook motif nuclear-localized protein 23	60.100%	Swiss-Prot	High
`O82166`	Arabidopsis thaliana	sp\|O82166\|AHL21_ARATH AT-hook motif nuclear-localized protein 21	82.400%	Swiss-Prot	Medium
`O49662`	Arabidopsis thaliana	sp\|O49662\|AHL24_ARATH AT-hook motif nuclear-localized protein 24	70.800%	Swiss-Prot	Medium
`O22130`	Arabidopsis thaliana	sp\|O22130\|AHL22_ARATH AT-hook motif nuclear-localized protein 22	71.300%	Swiss-Prot	Medium
`Q9SZ70`	Arabidopsis thaliana	sp\|Q9SZ70\|AHL26_ARATH AT-hook motif nuclear-localized protein 26	69.800%	Swiss-Prot	Medium

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