TkA01G208680 | RubberDandelionOmics

Gene overview

TkA01G208680

Reference: TK1151 Chr: Chr01 Coordinates: 53098234-53099298 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1020 bp · TkA01G208680|TK1151|cDNA

ATGGATGACCTTCCAGGCGATCTTTTATCAAACATACTTACCCGATTATTAGCGAGACAGATTGCTCAAATGAGGTGTATCTCTAAATTTTTGAACTTCTTCTTATCACAATCATCTTTCATAAAATCCCACCTCCAGCGTTCAATTCGTAATAACGTTGGTATTCTCTTGTTTTTCAACCATATATTTTCCTTTCGTGATGCTCGATCATTAACAGCACGCCCCTCTCGATCACCCCATCTCGAACTTACTGATTTCAT...

CDS

Download CDS FASTA

1020 bp · TkA01G208680|TK1151|CDS

ATGGATGACCTTCCAGGCGATCTTTTATCAAACATACTTACCCGATTATTAGCGAGACAGATTGCTCAAATGAGGTGTATCTCTAAATTTTTGAACTTCTTCTTATCACAATCATCTTTCATAAAATCCCACCTCCAGCGTTCAATTCGTAATAACGTTGGTATTCTCTTGTTTTTCAACCATATATTTTCCTTTCGTGATGCTCGATCATTAACAGCACGCCCCTCTCGATCACCCCATCTCGAACTTACTGATTTCAT...

Protein

Download Protein FASTA

339 aa · TkA01G208680|TK1151|PROTEIN

MDDLPGDLLSNILTRLLARQIAQMRCISKFLNFFLSQSSFIKSHLQRSIRNNVGILLFFNHIFSFRDARSLTARPSRSPHLELTDFIKLPVNFQSGETYGNVIGSVNGLICFTYGTVHDLTFYIWNPSLSAVLTLPPSSFAYNDYNLVGIPPRFGYDPKTDDYKLVKIDCDPKSVYKVEIYSMIKGFWRLIPKEFPTHILNNMCKREGFCAHGSDGFIHWFDLSSSREWLKTIVAFDLGEETFHVMPLPDCLKKFHNQQV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G208680`
TK1151 ID	TkA01G208680
OH-1004 ID	LXL04_022172
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	82.500
Protein coverage (%)	TK1151 99.705 / OH-1004 86.585 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G208680

Location Chr01:53098234-53099298 (-)

Description Similar to At3g06240: F-box/kelch-repeat protein At3g06240

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47300`	Probable F-box protein At5g47300.	No verified direct reference in this release
`At3g21170`	Putative F-box protein At3g21170.	No verified direct reference in this release
`At5g15660`	Putative F-box protein At5g15660.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022172 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009626 plant-type hypersensitive response Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042177 negative regulation of protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT3G06240

ath:AT3G10240

ath:AT3G23880

ath:AT4G12560

ath:AT4G22390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.700

Rank 1 · TkA01G208680 · TK1151

Nucleus0.390

Rank 2 · TkA01G208680 · TK1151

Endoplasmic reticulum0.078

Rank 3 · TkA01G208680 · TK1151

Cell membrane0.072

Rank 4 · TkA01G208680 · TK1151

Lysosome / Vacuole0.035

Rank 5 · TkA01G208680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like1-39 aa

PF00646F-box2-40 aa

PF12937F-box-like61-72 aa

PF08268FBA_387-301 aa

PF24750b-prop_At3g26010-like101-262 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G208680	`PF12937`	F-box-like	1	39	0.016	15.6
TkA01G208680	`PF00646`	F-box	2	40	0.0079	16.8
TkA01G208680	`PF12937`	F-box-like	61	72	0.016	15.6
TkA01G208680	`PF08268`	FBA_3	87	301	3.1e-23	83.0
TkA01G208680	`PF24750`	b-prop_At3g26010-like	101	262	2e-06	27.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVS9`	Arabidopsis thaliana	sp\|Q9LVS9\|FB340_ARATH Probable F-box protein At5g47300	23.400%	Swiss-Prot	Low
`Q9LU43`	Arabidopsis thaliana	sp\|Q9LU43\|FB172_ARATH Putative F-box protein At3g21170	22.300%	Swiss-Prot	Low
`Q9LFW0`	Arabidopsis thaliana	sp\|Q9LFW0\|FB257_ARATH Putative F-box protein At5g15660	22.800%	Swiss-Prot	Low

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