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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G199290
Reference: TK1151 Chr: Chr01 Coordinates: 50810276-50825058 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

837 bp · TkA01G199290|TK1151|cDNA

ATGAAGAGTTTCTGTTTTCTTCTATGCTTAGTTCTCGTGGGAGCAACTTCATTGGAGATCAATGCTCAGACTTGCAAACCAAGTGGTGGTATCCATGGAAGAACACCACCACCTGGCAAATGCAATCAACAGAACAACTCGGATTGTTGTGTTAAAGGTAAGTTTTACACCACGTATACATGCTCGCCTCCTGTGACAGATGATACCAAAGCAACACTGACAATAAACAGTTTCCAAAAGGGAGGTGATGGTGGTGGCCC...

CDS

Download CDS FASTA

837 bp · TkA01G199290|TK1151|CDS

ATGAAGAGTTTCTGTTTTCTTCTATGCTTAGTTCTCGTGGGAGCAACTTCATTGGAGATCAATGCTCAGACTTGCAAACCAAGTGGTGGTATCCATGGAAGAACACCACCACCTGGCAAATGCAATCAACAGAACAACTCGGATTGTTGTGTTAAAGGTAAGTTTTACACCACGTATACATGCTCGCCTCCTGTGACAGATGATACCAAAGCAACACTGACAATAAACAGTTTCCAAAAGGGAGGTGATGGTGGTGGCCC...

Protein

Download Protein FASTA

278 aa · TkA01G199290|TK1151|PROTEIN

MKSFCFLLCLVLVGATSLEINAQTCKPSGGIHGRTPPPGKCNQQNNSDCCVKGKFYTTYTCSPPVTDDTKATLTINSFQKGGDGGGPSECDNQYHDDDTPVVALSTGWYKGGDRCHKYITINGNGRSVKAMVVDECDSTMGCDGDHDYQPPCPNNIVDASKAVWKALGVSEDNWGDLGITWTEASPLDGGGPSECDNRYHDDNTPVVALSTGWYKGGDRCHKYITINGNRRSVRAMVVDECDSTMGCDDNIVDASEAVWK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G199290
TK1151 IDTkA01G199290
OH-1004 IDLXL04_010536
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)65.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G199290
LocationChr01:50810276-50825058 (-)
DescriptionSimilar to KWL1: Kiwellin-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0364800 Putative ripening-related protein 1. No verified direct reference in this release
Os02g0637000 Putative ripening-related protein 2. No verified direct reference in this release
UniProt: Q9FWU1 Putative ripening-related protein 4. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010536 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0050832 defense response to fungus Biological Process
GO:0051851 host-mediated perturbation of symbiont process Biological Process
GO:0005576 extracellular region Cellular Component
GO:0048046 apoplast Cellular Component
GO:0004857 enzyme inhibitor activity Molecular Function
KEGG gene cross-reference
vvi:100233091
zma:103626138
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.725
Rank 1 · TkA01G199290 · TK1151
Lysosome / Vacuole0.120
Rank 2 · TkA01G199290 · TK1151
Cytoplasm0.102
Rank 3 · TkA01G199290 · TK1151
Endoplasmic reticulum0.045
Rank 4 · TkA01G199290 · TK1151
Cell membrane0.034
Rank 5 · TkA01G199290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29515Expansin_N1-83 aa
PF24300KWL122-183 aa
PF10564MAR_sialic_bdg41-53 aa
PF03330DPBB_149-76 aa
PF18667BppU_IgG82-123 aa
PF29515Expansin_N92-146 aa
PF18838LPD23100-118 aa
PF10564MAR_sialic_bdg114-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G199290PF29515Expansin_N1832.7e-0834.8
TkA01G199290PF24300KWL1221831.5e-89299.6
TkA01G199290PF10564MAR_sialic_bdg41530.1313.0
TkA01G199290PF03330DPBB_149760.0001322.9
TkA01G199290PF18667BppU_IgG821230.2911.8
TkA01G199290PF29515Expansin_N921462.7e-0834.8
TkA01G199290PF18838LPD231001180.001618.9
TkA01G199290PF10564MAR_sialic_bdg1141490.1313.0
TkA01G199290PF03330DPBB_11191700.0001322.9
TkA01G199290PF17844SCP_31491760.2511.9
TkA01G199290PF26446DUF81251581920.2112.6
TkA01G199290PF24300KWL11882771.5e-89299.6
TkA01G199290PF18667BppU_IgG1942290.2911.8
TkA01G199290PF29515Expansin_N1982492.7e-0834.8
TkA01G199290PF18838LPD232072230.001618.9
TkA01G199290PF10564MAR_sialic_bdg2192540.1313.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7XVA8Oryza sativa subsp. japonicasp|Q7XVA8|RIP1_ORYSJ Putative ripening-related protein 154.500%Swiss-ProtMedium
Q6H5X0Oryza sativa subsp. japonicasp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 254.400%Swiss-ProtMedium
Q9FWU1Oryza sativa subsp. japonicasp|Q9FWU1|RIP4_ORYSJ Putative ripening-related protein 453.000%Swiss-ProtMedium

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