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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G199260
Reference: TK1151 Chr: Chr01 Coordinates: 50792045-50795945 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1032 bp · TkA01G199260|TK1151|cDNA

ATGAAGAGTTTCTGTTTTCTTCTATGCTTAGTTCTCGTGGGAGCAACTTCATTGGAGATCAATGCTCAGACTTGCAAACCAAGTGGTGGTATCCATGGAAGAACACCACCACCTGGCAAATGCAATCAACAGAACAACTCGGATTGTTGTGTTAAAGGTAAGTTTTACACCACGTATACATGCTCGCCTCCTGTGACAGATGATACCAAAGCAACATTGACAATAAACAGTTTCCAAAAGGGAGGTGATGGTGGTGGCCC...

CDS

Download CDS FASTA

1032 bp · TkA01G199260|TK1151|CDS

ATGAAGAGTTTCTGTTTTCTTCTATGCTTAGTTCTCGTGGGAGCAACTTCATTGGAGATCAATGCTCAGACTTGCAAACCAAGTGGTGGTATCCATGGAAGAACACCACCACCTGGCAAATGCAATCAACAGAACAACTCGGATTGTTGTGTTAAAGGTAAGTTTTACACCACGTATACATGCTCGCCTCCTGTGACAGATGATACCAAAGCAACATTGACAATAAACAGTTTCCAAAAGGGAGGTGATGGTGGTGGCCC...

Protein

Download Protein FASTA

343 aa · TkA01G199260|TK1151|PROTEIN

MKSFCFLLCLVLVGATSLEINAQTCKPSGGIHGRTPPPGKCNQQNNSDCCVKGKFYTTYTCSPPVTDDTKATLTINSFQKGGDGGGPSECDNQYHDDDTPVVALSTGWYKGGDRCHKYITINGNGRSVKAMVVDECDSTMGCDGDHDYQPPCPNNIVDASKAVWKALGVSEDNWGDLGITWTETCKPSGGMRGRKPPPGECNQDHDSDCCVQGKFYTTYTCSPPVTGHTKARLTINSFQKGGDGGGPSECDNRYHDDNTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G199260
TK1151 IDTkA01G199260
OH-1004 IDLXL04_004125
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)80.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G199260
LocationChr01:50792045-50795945 (-)
DescriptionSimilar to KWL1: Kiwellin-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0364800 Putative ripening-related protein 1. No verified direct reference in this release
Os02g0637000 Putative ripening-related protein 2. No verified direct reference in this release
Os10g0490100 Ripening-related protein 3. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004125 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0050832 defense response to fungus Biological Process
GO:0051851 host-mediated perturbation of symbiont process Biological Process
GO:0005576 extracellular region Cellular Component
GO:0048046 apoplast Cellular Component
GO:0004857 enzyme inhibitor activity Molecular Function
KEGG gene cross-reference
vvi:100233091
zma:103626138
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.746
Rank 1 · TkA01G199260 · TK1151
Lysosome / Vacuole0.119
Rank 2 · TkA01G199260 · TK1151
Cytoplasm0.116
Rank 3 · TkA01G199260 · TK1151
Endoplasmic reticulum0.042
Rank 4 · TkA01G199260 · TK1151
Cell membrane0.042
Rank 5 · TkA01G199260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29515Expansin_N1-83 aa
PF24300KWL122-183 aa
PF22311DUF697023-41 aa
PF10564MAR_sialic_bdg41-53 aa
PF03330DPBB_154-76 aa
PF29515Expansin_N79-146 aa
PF18838LPD23100-118 aa
PF10564MAR_sialic_bdg114-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G199260PF29515Expansin_N1835.7e-0730.4
TkA01G199260PF24300KWL1221831.5e-127423.8
TkA01G199260PF22311DUF697023410.04514.3
TkA01G199260PF10564MAR_sialic_bdg41530.0614.1
TkA01G199260PF03330DPBB_154762e-0525.4
TkA01G199260PF29515Expansin_N791465.7e-0730.4
TkA01G199260PF18838LPD231001180.002818.1
TkA01G199260PF10564MAR_sialic_bdg1141490.0614.1
TkA01G199260PF15347PAG1161650.02914.2
TkA01G199260PF03330DPBB_11191702e-0525.4
TkA01G199260PF17844SCP_31491760.1912.3
TkA01G199260PF24300KWL11833421.5e-127423.8
TkA01G199260PF22311DUF69701831950.04514.3
TkA01G199260PF29515Expansin_N2293065.7e-0730.4
TkA01G199260PF18838LPD232622780.002818.1
TkA01G199260PF10564MAR_sialic_bdg2743080.0614.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7XVA8Oryza sativa subsp. japonicasp|Q7XVA8|RIP1_ORYSJ Putative ripening-related protein 157.500%Swiss-ProtLow
Q6H5X0Oryza sativa subsp. japonicasp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 256.600%Swiss-ProtLow
Q9FWT5Oryza sativa subsp. japonicasp|Q9FWT5|RIP3_ORYSJ Ripening-related protein 353.300%Swiss-ProtLow

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