TkA01G185340 | RubberDandelionOmics

Gene overview

TkA01G185340

Reference: TK1151 Chr: Chr01 Coordinates: 47552849-47556392 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3330 bp · TkA01G185340|TK1151|cDNA

TTCGAGCATTTAAGACGGTAAGAGTGGCGATGGATGAAGGAGGACCCTCCGATGATTACGATCTGGATCCAAGGTAAGTATCCTGACCCGTTTCCTGTTGTGAATCACGACACCCGTTTCCTGTTTTACATGTTGTGAATCAAGTTGTATCATGACACCTGTTTCCTGCTTTACATGTTAAAATACAGTTACAGAGGACCAAACTACGATTCTGATTTTGAAGTAAGTGAATTCGAAGGAGATGAATCTGATGAGTCTTC...

CDS

Download CDS FASTA

2205 bp · TkA01G185340|TK1151|CDS

ATGTTAAAATACAGTTACAGAGGACCAAACTACGATTCTGATTTTGAAGTAAGTGAATTCGAAGGAGATGAATCTGATGAGTCTTCTGATTCAGGATTTGTGGTTGACCCAGACCTAGATGATAGTGATGTGGAAGCAAGTAGTTCCCAACCTAAAACTGATGTTCATGATGCATTTCTATACGACTTTTGCCATATCCCTGAAAGAAATGATAACATAGACGATGAAGAAATTAAGGAAGATGGAGTAGGTCTTGATAC...

Protein

Download Protein FASTA

734 aa · TkA01G185340|TK1151|PROTEIN

MLKYSYRGPNYDSDFEVSEFEGDESDESSDSGFVVDPDLDDSDVEASSSQPKTDVHDAFLYDFCHIPERNDNIDDEEIKEDGVGLDTAELDRESDDEVEPIEYGMHDPNVDWKKMKPHLGEMFANQEQLRFCLTNYAIQNGYPIRVVKSSSDRLQAKCGTDKDGKQCTFKMWASWMNRERSFQVKGFNDKHTCIRDFRRPTMVNPEWIAKHFIKLLCRRPKMKGREIQEAVKKKFLCEVSLGQCYRAKQKALEIINGKLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G185340`
TK1151 ID	TkA01G185340
OH-1004 ID	LXL04_018434
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	69.100
Protein coverage (%)	TK1151 94.414 / OH-1004 52.233 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G185340`
Location	Chr01:47552849-47556392 (-)
Description	Similar to Polygalacturonase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018434` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005975 carbohydrate metabolic process Biological Process GO:0009830 cell wall modification involved in abscission Biological Process GO:0009835 fruit ripening Biological Process GO:0009901 anther dehiscence Biological Process GO:0010047 fruit dehiscence Biological Process GO:0010227 floral organ abscission Biological Process GO:0045490 pectin catabolic process Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0048046 apoplast Cellular Component GO:0004650 polygalacturonase activity Molecular Function
KEGG gene cross-reference	ath:AT2G41850 ath:AT3G57510 sly:544051 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.962

Rank 1 · TkA01G185340 · TK1151

Cytoplasm0.091

Rank 2 · TkA01G185340 · TK1151

Cell membrane0.022

Rank 3 · TkA01G185340 · TK1151

Endoplasmic reticulum0.015

Rank 4 · TkA01G185340 · TK1151

Mitochondrion0.011

Rank 5 · TkA01G185340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03108DBD_Tnp_Mut118-184 aa

PF13565HTH_32175-246 aa

PF10551MULE252-287 aa

PF10551MULE317-413 aa

PF00872Transposase_mut335-414 aa

PF04434SWIM565-595 aa

PF30379SLU7_N671-690 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G185340	`PF03108`	DBD_Tnp_Mut	118	184	4.1e-06	27.1
TkA01G185340	`PF13565`	HTH_32	175	246	0.23	12.8
TkA01G185340	`PF10551`	MULE	252	287	1.9e-17	64.1
TkA01G185340	`PF10551`	MULE	317	413	1.9e-17	64.1
TkA01G185340	`PF00872`	Transposase_mut	335	414	2.8e-07	30.5
TkA01G185340	`PF04434`	SWIM	565	595	2.2e-08	34.1
TkA01G185340	`PF30379`	SLU7_N	671	690	0.52	10.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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