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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G185240
Reference: TK1151 Chr: Chr01 Coordinates: 47528540-47535364 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1548 bp · TkA01G185240|TK1151|cDNA

CCGAATAAGAATACGAAGAACTACCAGTCCTAAACCCTCCCTCACCTCTTCACAAAACCCTTTCTTCCTTAAAGTGTCCGTCTTTCATTCTCCACTCTTTCCTTGAAATCATTAAAATCGTATCACTGAAACAGACTGCTTTTTCTGCTTTTTTTTTTTTTTTTTTTCCTTTCTGGTTCTTTTGTAGTTTTCGTGTAAATTCGAAAAGTTAATTCTCGGGTAGCATTTAGTTTTCTGACGTAACTTTGAAAGAAGCGTCA...

CDS

Download CDS FASTA

966 bp · TkA01G185240|TK1151|CDS

ATGGTGGCTTTTAAGGGTCTTTTTACAAAGAAGACATTGTTTGCCCTTTTTCTGGGACAGGTTCTCTCCCTTTTGATCACTTCAACTGGGTTTTCATCATCTGTGCTTGCTAGAAGAGGAATCAATGCACCAACATCGCAGTCTTTAGCAAACTATGTGTTGTTGGCGATCGTTTATGGTGGAATTTTGATTTTCAGGAGACATAAGATGAAGGCAAAATGGTACTATTATTTACTTCTTGGACTTGTTGACGTCGAGGC...

Protein

Download Protein FASTA

321 aa · TkA01G185240|TK1151|PROTEIN

MVAFKGLFTKKTLFALFLGQVLSLLITSTGFSSSVLARRGINAPTSQSLANYVLLAIVYGGILIFRRHKMKAKWYYYLLLGLVDVEANYLVVKAYQYTSLTSVMLLDCWSIPSVIILTWLFLKTKYKFKKVVGVAICVAGLVLVIFSDVHAADRSQSGINPIKGDLLVIAGATLYAVSNVSEEFFVKTADQVELMAMLGLFGAIFSGIQISILEREELRSIHWSSGAVLPYAGFAAAMFLFYSGVPVLLKISGATMLNLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G185240
TK1151 IDTkA01G185240
OH-1004 IDLXL04_033193
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)84.300
Protein coverage (%)TK1151 99.065 / OH-1004 83.777
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G185240
LocationChr01:47528540-47535364 (-)
DescriptionSimilar to SLC35F1: Solute carrier family 35 member F1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033193 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015871 choline transport Biological Process
GO:0160255 tRNA queuosine(34) biosynthetic process from salvaged queuine Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0015220 choline transmembrane transporter activity Molecular Function
GO:0022857 transmembrane transporter activity Molecular Function
KEGG gene cross-reference
hsa:222553
hsa:54733
mmu:215085
mmu:72022
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.354
Rank 1 · TkA01G185240 · TK1151
Golgi apparatus0.268
Rank 2 · TkA01G185240 · TK1151
Cell membrane0.204
Rank 3 · TkA01G185240 · TK1151
Cytoplasm0.151
Rank 4 · TkA01G185240 · TK1151
Endoplasmic reticulum0.128
Rank 5 · TkA01G185240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04549CD473-37 aa
PF06027SLC35F8-299 aa
PF19579FtsL_29-28 aa
PF00892EamA25-145 aa
PF19579FtsL_253-73 aa
PF18422TNFR_16_TM55-65 aa
PF08449UAA65-299 aa
PF08627CRT-like70-209 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G185240PF04549CD473377.07.6
TkA01G185240PF06027SLC35F82991.5e-131439.1
TkA01G185240PF19579FtsL_29281.89.2
TkA01G185240PF00892EamA251453.1e-1660.6
TkA01G185240PF19579FtsL_253731.89.2
TkA01G185240PF18422TNFR_16_TM55651.69.7
TkA01G185240PF08449UAA652991.4e-0525.1
TkA01G185240PF08627CRT-like702093.2e-0937.0
TkA01G185240PF05653Mg_trans_NIPA741500.001218.8
TkA01G185240PF09522RE_R_Pab1751240.0315.3
TkA01G185240PF04549CD47931507.07.6
TkA01G185240PF19579FtsL_21271601.89.2
TkA01G185240PF05961Chordopox_A13L1341470.2112.6
TkA01G185240PF00892EamA1632983.1e-1660.6
TkA01G185240PF05961Chordopox_A13L1681790.2112.6
TkA01G185240PF05653Mg_trans_NIPA1692210.001218.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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