TkA01G181960 | RubberDandelionOmics

Gene overview

TkA01G181960

Reference: TK1151 Chr: Chr01 Coordinates: 46671447-46672218 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

693 bp · TkA01G181960|TK1151|cDNA

ATGGGGTCAATATGCGGACGACCATGCGCTCTCACGTTTGACTCTGCATCAGGCGATTTCTACATAGCAGATGCGTACCATGGAGTTCTAGCTACGGGCCCTGTCGGTGGGGATGTAATTAAGCTTGTTGGCGGGTTCAAGTTTGCTAATGGCGTTGACAAGGACATGACAAGCGGACGTATTTATTTCAGCGATGCTAGTTTGACTTATGATCTTAAAGATACTACACAACCGGGATTTATACCCGATGCAAGTGGGAG...

CDS

Download CDS FASTA

693 bp · TkA01G181960|TK1151|CDS

ATGGGGTCAATATGCGGACGACCATGCGCTCTCACGTTTGACTCTGCATCAGGCGATTTCTACATAGCAGATGCGTACCATGGAGTTCTAGCTACGGGCCCTGTCGGTGGGGATGTAATTAAGCTTGTTGGCGGGTTCAAGTTTGCTAATGGCGTTGACAAGGACATGACAAGCGGACGTATTTATTTCAGCGATGCTAGTTTGACTTATGATCTTAAAGATACTACACAACCGGGATTTATACCCGATGCAAGTGGGAG...

Protein

Download Protein FASTA

230 aa · TkA01G181960|TK1151|PROTEIN

MGSICGRPCALTFDSASGDFYIADAYHGVLATGPVGGDVIKLVGGFKFANGVDKDMTSGRIYFSDASLTYDLKDTTQPGFIPDASGRFMRYDDRATEKVSTLLSGLRGGGGPAVSHDGTFILISENRNDRITKYFPEGPGVLLQVNGNPDKITQVEDREEFWVATTRIGYVRPKAIIIPEGVRFDSNGKVLQTVQFGNEYRNLPINMVLEREGKLYVCSQFTDFIGVYSK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G181960`
TK1151 ID	TkA01G181960
OH-1004 ID	LXL04_008761
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	52.600
Protein coverage (%)	TK1151 99.565 / OH-1004 70.303 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G181960`
Location	Chr01:46671447-46672218 (+)
Description	Similar to SSL12: Protein STRICTOSIDINE SYNTHASE-LIKE 12
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_008761` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009611 response to wounding Biological Process GO:0009753 response to jasmonic acid Biological Process GO:0009820 alkaloid metabolic process Biological Process GO:0009821 alkaloid biosynthetic process Biological Process GO:0035834 indole alkaloid metabolic process Biological Process GO:0051365 cellular response to potassium ion starvation Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005773 vacuole Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	ag:CAA44208 ath:AT1G74000 ath:AT1G74020 ath:AT3G57030 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.736

Rank 1 · TkA01G181960 · TK1151

Cytoplasm0.148

Rank 2 · TkA01G181960 · TK1151

Nucleus0.040

Rank 3 · TkA01G181960 · TK1151

Lysosome / Vacuole0.028

Rank 4 · TkA01G181960 · TK1151

Endoplasmic reticulum0.024

Rank 5 · TkA01G181960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01436NHL11-27 aa

PF01436NHL48-62 aa

PF03088Str_synth50-137 aa

PF08450SGL58-217 aa

PF01436NHL120-134 aa

PF03088Str_synth178-191 aa

PF01436NHL179-191 aa

PF01436NHL212-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G181960	`PF01436`	NHL	11	27	0.014	16.2
TkA01G181960	`PF01436`	NHL	48	62	0.014	16.2
TkA01G181960	`PF03088`	Str_synth	50	137	5.1e-15	56.1
TkA01G181960	`PF08450`	SGL	58	217	0.029	14.7
TkA01G181960	`PF01436`	NHL	120	134	0.014	16.2
TkA01G181960	`PF03088`	Str_synth	178	191	5.1e-15	56.1
TkA01G181960	`PF01436`	NHL	179	191	0.014	16.2
TkA01G181960	`PF01436`	NHL	212	218	0.014	16.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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