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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G177970
Reference: TK1151 Chr: Chr01 Coordinates: 45620155-45623396 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1802 bp · TkA01G177970|TK1151|cDNA

GTGTTCTTGAGTTCGTTGTTGTGGGGCTGGAGCAGAAACGGGAAGGAAAAACGTGAATGAAAGAAAGAAGGAAGAAATATGATAGAGTTTAATGTTATTAAGGGTAAATATGTCATCTGTCACTTTCCAAACTTAGCATGGATCGTAATTCCATCCCTCTTACGAAGGATTCTATTTTCAGCCATTTGGTGGAAAAAATATCATTTAGGAATCTTTTTCTCAGCCTTATCTAAAACCAAACGCAGGAATTCAAAGAAATT...

CDS

Download CDS FASTA

993 bp · TkA01G177970|TK1151|CDS

ATGTCAACTACTCCCAACAGCTATCCATCTCTCTGTTCTTCTCCGCCATTACCACGAACAATAAACTCACTAACGACACAACCGTTATCTTTCGTCACATCTCAGTTCAAGCAAACGTTGCTAAAAAAGCCCAAAACCCTAAGTTTTTCAATCAGGTTAGGGAATTCGAGTTTGGAGAAACAATCGATTTTGATAGTTAGAGCGTCGGCGGAAAATGGAGCAGCAGAAGAAGAGGAAAAGTACGAAGAATATGAGGTAGA...

Protein

Download Protein FASTA

330 aa · TkA01G177970|TK1151|PROTEIN

MSTTPNSYPSLCSSPPLPRTINSLTTQPLSFVTSQFKQTLLKKPKTLSFSIRLGNSSLEKQSILIVRASAENGAAEEEEKYEEYEVELDQPYGLRFAKGRDGGTYIDAIAPGGNADKTKLFTVGDKVVATSAVFGTEMWPAAEYGRTMYTIRQRIGPLLMKMEKRYGKMDDDSKLTEKEIIRAERNSGIVSGKLREIQMQNYLRKKEQKETRTRELREGLQLYKSGKYEEALEKFESVLGSKPEINESSVASYNVACCYS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G177970
TK1151 IDTkA01G177970
OH-1004 IDLXL04_004226
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G177970
LocationChr01:45620155-45623396 (+)
DescriptionSimilar to MET1: Protein MET1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g55480 Involved in photosystem II supercomplex formation and repair, probably acting as a psbB/psbC chaperone on the stromal side of the membrane. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004226 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005983 starch catabolic process Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009611 response to wounding Biological Process
GO:0009644 response to high light intensity Biological Process
GO:0010206 photosystem II repair Biological Process
GO:0010207 photosystem II assembly Biological Process
GO:0010270 photosystem II oxygen evolving complex assembly Biological Process
GO:0015979 photosynthesis Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009523 photosystem II Cellular Component
KEGG gene cross-reference
ath:AT1G02910
ath:AT1G55480
ath:AT3G01510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.983
Rank 1 · TkA01G177970 · TK1151
Mitochondrion0.023
Rank 2 · TkA01G177970 · TK1151
Nucleus0.016
Rank 3 · TkA01G177970 · TK1151
Cytoplasm0.012
Rank 4 · TkA01G177970 · TK1151
Cell membrane0.011
Rank 5 · TkA01G177970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00595PDZ42-76 aa
PF13432TPR_1668-83 aa
PF00595PDZ89-128 aa
PF13174TPR_6216-239 aa
PF13432TPR_16216-245 aa
PF07719TPR_2217-239 aa
PF00515TPR_1219-239 aa
PF12895ANAPC3219-274 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G177970PF00595PDZ42760.09613.8
TkA01G177970PF13432TPR_1668830.2412.6
TkA01G177970PF00595PDZ891280.09613.8
TkA01G177970PF13174TPR_62162390.07914.4
TkA01G177970PF13432TPR_162162450.2412.6
TkA01G177970PF07719TPR_22172390.0002621.6
TkA01G177970PF00515TPR_12192390.001518.9
TkA01G177970PF12895ANAPC32192740.004618.0
TkA01G177970PF13371TPR_92192440.07313.8
TkA01G177970PF13414TPR_112192370.07613.4
TkA01G177970PF09976TPR_212202820.06613.7
TkA01G177970PF14559TPR_192222850.002818.7
TkA01G177970PF13181TPR_82232440.1313.2
TkA01G177970PF21033RMD1-32252780.07612.9
TkA01G177970PF13414TPR_112472570.07613.4
TkA01G177970PF00515TPR_12512720.001518.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94BS2Arabidopsis thalianasp|Q94BS2|MET1_ARATH Protein MET1, chloroplastic65.600%Swiss-ProtHigh

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