TkA01G167480 | RubberDandelionOmics

Gene overview

TkA01G167480

Reference: TK1151 Chr: Chr01 Coordinates: 42809160-42815980 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2830 bp · TkA01G167480|TK1151|cDNA

ATCGCGACAGCTGTACCAATCATAGATAATCATGCTCTCCCTATCTCTGAAATATACGTGAGTTCGGCCCGATTTTTGTTAGTCAATCTGTCGACTAGGTTCTGTGTGTCTGTGGATGACTACATATACAGCGGACCTGTATATATAAGCGGCGGTATCGATGAGCAGACAGTGAAACCCTACACCTGAGAGCCGTGACTCGTGAACGAGTTTCCTCATCCCTGTTTGCATTTAAGACCACCGCAGGCACCAAATCACCT...

CDS

Download CDS FASTA

2169 bp · TkA01G167480|TK1151|CDS

ATGGCGGCGATCGATCCAACTCGTGGTTTCCTTAAAGATGTTAAGCGTATCGTAATCAAGGTTGGGACAGCTGTCGTCACCCGAGAGGACGGAAGGCTTGCGCTCGGAAGACTCGGAGCTCTCTGTGAGCAGATTCAAATACTAAATTCTCAAGGATTTGAGGTGATCTTGGTCTCATCAGGTGCTGTTGGTGCAGGTAGACAACGTCTCAGATACAGGAAATTAGTCCACAGCAGCTTTGCGGACCTTCAAAAGCCACA...

Protein

Download Protein FASTA

722 aa · TkA01G167480|TK1151|PROTEIN

MAAIDPTRGFLKDVKRIVIKVGTAVVTREDGRLALGRLGALCEQIQILNSQGFEVILVSSGAVGAGRQRLRYRKLVHSSFADLQKPQVELDGKACAAVGQNGLMALYDTLFSQLDVTSAQLLVTDNDFRSPEFRKQLTETVDSLLSYKVIPVFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVDGLYSGPPSDPQSKLIYTYIKEKLENTITFGDKSRLGRGGMTAKVKAAVYASQAGIPVIITS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G167480`
TK1151 ID	TkA01G167480
OH-1004 ID	LXL04_012398
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G167480

Location Chr01:42809160-42815980 (+)

Description Similar to Delta-1-pyrroline-5-carboxylate synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55610`	P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0455500`	P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012398 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009555 pollen development Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0048364 root development Biological Process

GO:0055129 L-proline biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G39800

ath:AT3G55610

dosa:Os05g0455500

osa:4338979

sly:544281

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.687

Rank 1 · TkA01G167480 · TK1151

Nucleus0.308

Rank 2 · TkA01G167480 · TK1151

Mitochondrion0.104

Rank 3 · TkA01G167480 · TK1151

Peroxisome0.072

Rank 4 · TkA01G167480 · TK1151

Cell membrane0.059

Rank 5 · TkA01G167480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00696AA_kinase15-260 aa

PF05141DIT1_PvcA32-63 aa

PF23746Gp41_Mu280-311 aa

PF00171Aldedh294-558 aa

PF23746Gp41_Mu323-365 aa

PF00171Aldedh604-662 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G167480	`PF00696`	AA_kinase	15	260	3.3e-39	135.7
TkA01G167480	`PF05141`	DIT1_PvcA	32	63	0.32	11.2
TkA01G167480	`PF23746`	Gp41_Mu	280	311	0.11	13.4
TkA01G167480	`PF00171`	Aldedh	294	558	8.1e-11	41.8
TkA01G167480	`PF23746`	Gp41_Mu	323	365	0.11	13.4
TkA01G167480	`PF00171`	Aldedh	604	662	8.1e-11	41.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P54888`	Arabidopsis thaliana	sp\|P54888\|P5CS2_ARATH Delta-1-pyrroline-5-carboxylate synthase B	75.500%	Swiss-Prot	High
`O04226`	Oryza sativa subsp. japonica	sp\|O04226\|P5CS1_ORYSJ Delta-1-pyrroline-5-carboxylate synthase 1	75.200%	Swiss-Prot	High

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