TkA01G167040 | RubberDandelionOmics

Gene overview

TkA01G167040

Reference: TK1151 Chr: Chr01 Coordinates: 42707636-42715784 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1993 bp · TkA01G167040|TK1151|cDNA

CTCTCTATAAAGCCCATTGTTTTTATTTTATTTAGTTTTTTGTGAGAATGTCATTTCAAGTGGAGGAGACCCAGCAAAACAAAAGAGTTGGAGGTGACAAAGAAATGGAGTGGGTTCGTGATTCATCTTTGGATCATAAAGGGAGACTTCCTCTTCGATCCTCCACAGGAACTTGGAGAGCCTCATTCTTCATCATCGCGATCGAGTTCACTGAAAGACTTAGCTACTTTGCCATAGCAACAAAATCTCATCACCTACCT...

CDS

Download CDS FASTA

1023 bp · TkA01G167040|TK1151|CDS

ATGGCCATAACCATCATCATATTCTACTTCGGAAGGAAATTTTACCGTTACCGTGTACCCAAAGGCAGCCCGTTTACCCCAATTTTACAGGTTCTCGTTGCATCATTTACTAAGAGAAAGCTACCTCATCCTTCGAGCTCGGATTCGTTATACGAACTCCCCGACTCGGGAAGATTACTAAATCATACGGATAAACTCAGGTTTCTTGATAAAGCATGTATCGTTGAAGATAACGAGATACAAGCACCATCTCCTTGGAG...

Protein

Download Protein FASTA

340 aa · TkA01G167040|TK1151|PROTEIN

MAITIIIFYFGRKFYRYRVPKGSPFTPILQVLVASFTKRKLPHPSSSDSLYELPDSGRLLNHTDKLRFLDKACIVEDNEIQAPSPWRQSTVTKVEETKLIVNMIPIWLTSLQFGVCIAQPATFFVKQSSTMNRMIGKSFEIPPATISALTAVGMLSCVVFYEKIMTPVLRRITGKERGIPILQRVGIGMIVSILGMVIAALVEKQRLMVAEKEKGSNVRFLSMSVFWLAPQLLILGIADGFTLVGLQEFYYEQVPDSMRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G167040`
TK1151 ID	TkA01G167040
OH-1004 ID	LXL04_012406
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 59.965 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G167040

Location Chr01:42707636-42715784 (-)

Description Similar to NPF5.6: Protein NRT1/ PTR FAMILY 5.6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37900`	Protein NRT1/ PTR FAMILY 5.6.	No verified direct reference in this release
`At3g53960`	Protein NRT1/ PTR FAMILY 5.7.	No verified direct reference in this release
`At3g54450`	Protein NRT1/ PTR FAMILY 5.4.	No verified direct reference in this release
`At3g54140`	Peptide transporter.	AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At5g01180`	Peptide transporter.	AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012406 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006857 oligopeptide transport Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0015031 protein transport Biological Process

GO:0042938 dipeptide transport Biological Process

GO:0042939 tripeptide transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G62200

ath:AT2G37900

ath:AT3G53960

ath:AT3G54140

ath:AT5G01180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.726

Rank 1 · TkA01G167040 · TK1151

Endoplasmic reticulum0.106

Rank 2 · TkA01G167040 · TK1151

Lysosome / Vacuole0.084

Rank 3 · TkA01G167040 · TK1151

Cytoplasm0.063

Rank 4 · TkA01G167040 · TK1151

Golgi apparatus0.030

Rank 5 · TkA01G167040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00854PTR21-289 aa

PF07690MFS_182-277 aa

PF05725FNIP98-120 aa

PF05255UPF0220187-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G167040	`PF00854`	PTR2	1	289	2.3e-55	188.8
TkA01G167040	`PF07690`	MFS_1	82	277	2.5e-05	24.1
TkA01G167040	`PF05725`	FNIP	98	120	0.018	15.9
TkA01G167040	`PF05255`	UPF0220	187	241	0.044	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0CI03`	Arabidopsis thaliana	sp\|P0CI03\|PTR28_ARATH Protein NRT1/ PTR FAMILY 5.6	57.300%	Swiss-Prot	High
`Q9M331`	Arabidopsis thaliana	sp\|Q9M331\|PTR45_ARATH Protein NRT1/ PTR FAMILY 5.7	55.200%	Swiss-Prot	High
`Q9M1I2`	Arabidopsis thaliana	sp\|Q9M1I2\|PTR46_ARATH Protein NRT1/ PTR FAMILY 5.4	40.700%	Swiss-Prot	Medium
`Q9M390`	Arabidopsis thaliana	sp\|Q9M390\|PTR1_ARATH Protein NRT1/ PTR FAMILY 8.1	39.900%	Swiss-Prot	Medium
`Q9LFB8`	Arabidopsis thaliana	sp\|Q9LFB8\|PTR5_ARATH Protein NRT1/ PTR FAMILY 8.2	40.200%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card