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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G164410
Reference: TK1151 Chr: Chr01 Coordinates: 41987888-41990014 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1342 bp · TkA01G164410|TK1151|cDNA

AATTCACACGTTCTAGATCTATTAATTTTCCCCTCTTTCTAGCTCCTTCGCATCTGCGAACCCTAAGCGATCTATACCTTCCCCCTTCCACTCTGAATCTCTACAACTTTTTTCCATGGATTTCGGCCTTGCTAGAAAACGAGGGAGGCCAGGAGCTGGCTTGAACGGCAACTCTGGATTCAAAAAATCCAAACAAGACACGGAGTCGTTTCAATCTGGTTTAGGAAGCAAATCGAAGCCATGTACAAAGTTTTTCAGCA...

CDS

Download CDS FASTA

945 bp · TkA01G164410|TK1151|CDS

ATGGATTTCGGCCTTGCTAGAAAACGAGGGAGGCCAGGAGCTGGCTTGAACGGCAACTCTGGATTCAAAAAATCCAAACAAGACACGGAGTCGTTTCAATCTGGTTTAGGAAGCAAATCGAAGCCATGTACAAAGTTTTTCAGCACTTCCGGCTGCCCATTTGGCGAAGGGTGTCACTTTCTTCATCATGTCCCCGGAGGTCTGAAAGCCGTCAACCAAATGAGTGGCGGCAACCACCAGTCTCTACCACCAACCGCCAG...

Protein

Download Protein FASTA

314 aa · TkA01G164410|TK1151|PROTEIN

MDFGLARKRGRPGAGLNGNSGFKKSKQDTESFQSGLGSKSKPCTKFFSTSGCPFGEGCHFLHHVPGGLKAVNQMSGGNHQSLPPTARPSPLPSSFPDGSSPPAVKSRLCNKFNSAEGCRFGDKCHFAHGEWELGKPTVQSSGRFGGGGGGGGGGRMDLNPAANNTAAASFGASATAKISVNASLAGGIIGKNGVNSKQIIRSTGAKLSIRDHESDPNLRNIELEGTFDQIKQASQMVRELIVNISSASSGPPPPHKSFGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G164410
TK1151 IDTkA01G164410
OH-1004 IDLXL04_004366
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G164410
LocationChr01:41987888-41990014 (-)
DescriptionSimilar to Os02g0194200: Zinc finger CCCH domain-containing protein 14
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12130 Zinc finger CCCH domain-containing protein 36. No verified direct reference in this release
At5g06770 Zinc finger CCCH domain-containing protein 52. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0194200 Zinc finger CCCH domain-containing protein 14. No verified direct reference in this release
Os04g0665700 Zinc finger CCCH domain-containing protein 31. No verified direct reference in this release
Os06g0618100 Zinc finger CCCH domain-containing protein 44. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004366 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0051252 regulation of RNA metabolic process Biological Process
GO:1900057 positive regulation of leaf senescence Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G12130
dosa:Os02g0194200
dosa:Os04g0665700
dosa:Os06g0618100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.834
Rank 1 · TkA01G164410 · TK1151
Cytoplasm0.328
Rank 2 · TkA01G164410 · TK1151
Cell membrane0.025
Rank 3 · TkA01G164410 · TK1151
Mitochondrion0.022
Rank 4 · TkA01G164410 · TK1151
Endoplasmic reticulum0.021
Rank 5 · TkA01G164410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16131Torus38-68 aa
PF00642zf-CCCH39-63 aa
PF15663zf-CCCH_340-63 aa
PF18044zf-CCCH_441-62 aa
PF20992CBP66_2nd41-63 aa
PF14608zf-CCCH_242-62 aa
PF08098ATX_III42-59 aa
PF19242Zn_finger_prot43-62 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G164410PF16131Torus38685.3e-0730.9
TkA01G164410PF00642zf-CCCH39634.6e-1659.0
TkA01G164410PF15663zf-CCCH_340630.6710.9
TkA01G164410PF18044zf-CCCH_441623.2e-1246.6
TkA01G164410PF20992CBP66_2nd41630.009316.6
TkA01G164410PF14608zf-CCCH_242625.7e-0730.5
TkA01G164410PF08098ATX_III42590.5311.1
TkA01G164410PF19242Zn_finger_prot43620.4910.9
TkA01G164410PF18345zf_CCCH_445621.7e-0938.2
TkA01G164410PF25585zf-CCCH_DUS3L45622.5e-0834.4
TkA01G164410PF25261zf-CCCH_PARP1245642.98.9
TkA01G164410PF08352oligo_HPY48600.01916.1
TkA01G164410PF23261zf-CCCH_1148620.3511.2
TkA01G164410PF23261zf-CCCH_111021290.3511.2
TkA01G164410PF00642zf-CCCH1051304.6e-1659.0
TkA01G164410PF25585zf-CCCH_DUS3L1051282.5e-0834.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C7C3Arabidopsis thalianasp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 3650.200%Swiss-ProtHigh
Q9FG30Arabidopsis thalianasp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 5244.500%Swiss-ProtMedium
Q7F8R0Oryza sativa subsp. japonicasp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 1458.000%Swiss-ProtHigh
Q7XPK1Oryza sativa subsp. japonicasp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 3154.800%Swiss-ProtHigh
Q69XQ3Oryza sativa subsp. japonicasp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 4453.900%Swiss-ProtHigh

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