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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G161740
Reference: TK1151 Chr: Chr01 Coordinates: 41336025-41338463 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1803 bp · TkA01G161740|TK1151|cDNA

ATGCATCCTTGTGTTTTTATAATTTTCTCCATTCTCTTGCTACTCCTTGAGACTGCCACTGCCGACCAATTGGTGGCAGTGGAAGCTGTTAACAAGAACTGCTCTGATGTGGAGAGACGTGCTCTCCTTGATTTTAAAGCTAACCTTCAAGATCCCGAAGGCGCTCTCTCTACATGGACAACCGAAGATCATGATTGCTGTTCATGGCCAGGAGTCATATGTAACAACCAAACAGAGTTTGGAAACCTCACTAACTTGCA...

CDS

Download CDS FASTA

1803 bp · TkA01G161740|TK1151|CDS

ATGCATCCTTGTGTTTTTATAATTTTCTCCATTCTCTTGCTACTCCTTGAGACTGCCACTGCCGACCAATTGGTGGCAGTGGAAGCTGTTAACAAGAACTGCTCTGATGTGGAGAGACGTGCTCTCCTTGATTTTAAAGCTAACCTTCAAGATCCCGAAGGCGCTCTCTCTACATGGACAACCGAAGATCATGATTGCTGTTCATGGCCAGGAGTCATATGTAACAACCAAACAGAGTTTGGAAACCTCACTAACTTGCA...

Protein

Download Protein FASTA

600 aa · TkA01G161740|TK1151|PROTEIN

MHPCVFIIFSILLLLLETATADQLVAVEAVNKNCSDVERRALLDFKANLQDPEGALSTWTTEDHDCCSWPGVICNNQTEFGNLTNLQHLNLEDVGVCRVENPEWLSHLSDLDLLKMDGVSLAKADNWVDVISSLPKLAWLSLDGCELSQVKYPNSSFLNSSLSIQFLYLENNNLTSSMYHWLVKLTSNNLLDLDISGNRLDVMPTYFGKLCNLKSLSFDNNFVAVKFPNFLNNLSGCTALTLQWLSAIESHFTGFLSDDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G161740
TK1151 IDTkA01G161740
OH-1004 IDLXL04_004341
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)60.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G161740
LocationChr01:41336025-41338463 (+)
DescriptionSimilar to EIX2: Receptor-like protein EIX2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004341 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0007165 signal transduction Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT4G13810
ath:AT5G40170
sly:543900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.852
Rank 1 · TkA01G161740 · TK1151
Endoplasmic reticulum0.097
Rank 2 · TkA01G161740 · TK1151
Cytoplasm0.056
Rank 3 · TkA01G161740 · TK1151
Nucleus0.035
Rank 4 · TkA01G161740 · TK1151
Lysosome / Vacuole0.033
Rank 5 · TkA01G161740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02950Conotoxin4-75 aa
PF08263LRRNT_238-75 aa
PF23622LRR_At1g61320_AtMIF177-115 aa
PF13855LRR_879-118 aa
PF23598LRR_1479-195 aa
PF25019LRR_R13L1-DRL2179-117 aa
PF12799LRR_480-92 aa
PF29594LRR_SKP283-203 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G161740PF02950Conotoxin4750.1114.2
TkA01G161740PF08263LRRNT_238754.3e-1453.2
TkA01G161740PF23622LRR_At1g61320_AtMIF1771150.899.6
TkA01G161740PF13855LRR_8791181e-2073.9
TkA01G161740PF23598LRR_14791951.1e-1558.0
TkA01G161740PF25019LRR_R13L1-DRL21791170.02715.1
TkA01G161740PF12799LRR_480923.4e-1453.2
TkA01G161740PF29594LRR_SKP2832031.98.4
TkA01G161740PF12799LRR_4841123.4e-1453.2
TkA01G161740PF25019LRR_R13L1-DRL21841440.02715.1
TkA01G161740PF00560LRR_1851081.1e-2584.9
TkA01G161740PF25019LRR_R13L1-DRL211081460.02715.1
TkA01G161740PF23622LRR_At1g61320_AtMIF11182510.899.6
TkA01G161740PF23211LRR_LRWD11281420.5210.7
TkA01G161740PF13855LRR_81301471e-2073.9
TkA01G161740PF00560LRR_11371491.1e-2584.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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