TkA01G144980 | RubberDandelionOmics

Gene overview

TkA01G144980

Reference: TK1151 Chr: Chr01 Coordinates: 36684609-36687240 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1788 bp · TkA01G144980|TK1151|cDNA

ATGTACAGAAGTTATGCGGAGAAGGCTGGTTTTGATGTTCGTTTGAATACAGAAAGGAAATCTGGTGAAAGGGTAATTCACAAGTATCTGGTTTGCCACAGGAACGGCAAACCACCAAACAAATCTGTCGAAATCAAGAACAAACGCAACACACACTACAGGTCGACTAACTGCAAAGCAAAAATTGTTATTAAACATATAGATGGGTCAACTGATTACAGATTTGATAAATTCGAAGAACTGCATAACCATGAAATGGA...

CDS

Download CDS FASTA

1788 bp · TkA01G144980|TK1151|CDS

ATGTACAGAAGTTATGCGGAGAAGGCTGGTTTTGATGTTCGTTTGAATACAGAAAGGAAATCTGGTGAAAGGGTAATTCACAAGTATCTGGTTTGCCACAGGAACGGCAAACCACCAAACAAATCTGTCGAAATCAAGAACAAACGCAACACACACTACAGGTCGACTAACTGCAAAGCAAAAATTGTTATTAAACATATAGATGGGTCAACTGATTACAGATTTGATAAATTCGAAGAACTGCATAACCATGAAATGGA...

Protein

Download Protein FASTA

595 aa · TkA01G144980|TK1151|PROTEIN

MYRSYAEKAGFDVRLNTERKSGERVIHKYLVCHRNGKPPNKSVEIKNKRNTHYRSTNCKAKIVIKHIDGSTDYRFDKFEELHNHEMEDAFHLRKNRKLSFSDKEFIMRASTAKIGATKAYKLKATLKGGFEQVKGKVVDFKNFTRDMGSIIGSNDAQLIVNKLLDRKENYPNFSYYHRLDENKVLNALFWADETEKAYYNEFGDVMSFDATFRTNKYGLVFVPFTVIDHHKSSVTVGAGLLSTEDVPSYKWLLQRFLEAH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G144980`
TK1151 ID	TkA01G144980
OH-1004 ID	LXL04_031554
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.800
Protein coverage (%)	TK1151 98.992 / OH-1004 69.066 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G144980

Location Chr01:36684609-36687240 (+)

Description Similar to FRS5: Protein FAR1-RELATED SEQUENCE 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38180`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031554 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009585 red, far-red light phototransduction Biological Process

GO:0009639 response to red or far red light Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0010018 far-red light signaling pathway Biological Process

GO:0010218 response to far red light Biological Process

GO:0042753 positive regulation of circadian rhythm Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:1900056 negative regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G52520

ath:AT3G22170

ath:AT4G15090

ath:AT4G38180

ath:AT5G28530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.930

Rank 1 · TkA01G144980 · TK1151

Cytoplasm0.118

Rank 2 · TkA01G144980 · TK1151

Mitochondrion0.027

Rank 3 · TkA01G144980 · TK1151

Cell membrane0.017

Rank 4 · TkA01G144980 · TK1151

Extracellular0.012

Rank 5 · TkA01G144980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03101FAR12-86 aa

PF23756Beta-prop_HPS598-234 aa

PF21056ZSWIM1-3_RNaseH-like178-288 aa

PF10551MULE205-299 aa

PF00872Transposase_mut238-327 aa

PF01825GPS318-359 aa

PF23756Beta-prop_HPS5354-392 aa

PF01825GPS404-424 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G144980	`PF03101`	FAR1	2	86	2.8e-14	54.3
TkA01G144980	`PF23756`	Beta-prop_HPS5	98	234	0.037	14.0
TkA01G144980	`PF21056`	ZSWIM1-3_RNaseH-like	178	288	4.3e-11	43.5
TkA01G144980	`PF10551`	MULE	205	299	1.8e-29	102.7
TkA01G144980	`PF00872`	Transposase_mut	238	327	2.2e-05	24.2
TkA01G144980	`PF01825`	GPS	318	359	1.3	10.2
TkA01G144980	`PF23756`	Beta-prop_HPS5	354	392	0.037	14.0
TkA01G144980	`PF01825`	GPS	404	424	1.3	10.2
TkA01G144980	`PF04434`	SWIM	407	431	5.9e-05	23.2
TkA01G144980	`PF01825`	GPS	497	531	1.3	10.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SZL8`	Arabidopsis thaliana	sp\|Q9SZL8\|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5	28.700%	Swiss-Prot	Low

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