TkA01G136190 | RubberDandelionOmics

Gene overview

TkA01G136190

Reference: TK1151 Chr: Chr01 Coordinates: 34564648-34566346 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1218 bp · TkA01G136190|TK1151|cDNA

ATGACAAGGAAGTGGTATGGGAGTTACCATTTGTTTGCTTGCCTAGCCAGGTTCCCTAAGAAAACCACGAACGAGAAGATTGTAAACCCTACTGTTACAAGGCACGAGGTGCATGAGAAGGTGCATGGGGAAGTACCAAATCGCCGTGCTAATCAACAGGTGACTTATGCTTCCATTATGAAGTGTGGGTTGAATAAAGGGGAACAACCAGTTGAGGACGGCAGCTGCAATAAGGCTGGTGATCAATGTGTTCAAACTGC...

CDS

Download CDS FASTA

1218 bp · TkA01G136190|TK1151|CDS

ATGACAAGGAAGTGGTATGGGAGTTACCATTTGTTTGCTTGCCTAGCCAGGTTCCCTAAGAAAACCACGAACGAGAAGATTGTAAACCCTACTGTTACAAGGCACGAGGTGCATGAGAAGGTGCATGGGGAAGTACCAAATCGCCGTGCTAATCAACAGGTGACTTATGCTTCCATTATGAAGTGTGGGTTGAATAAAGGGGAACAACCAGTTGAGGACGGCAGCTGCAATAAGGCTGGTGATCAATGTGTTCAAACTGC...

Protein

Download Protein FASTA

405 aa · TkA01G136190|TK1151|PROTEIN

MTRKWYGSYHLFACLARFPKKTTNEKIVNPTVTRHEVHEKVHGEVPNRRANQQVTYASIMKCGLNKGEQPVEDGSCNKAGDQCVQTAKVPMKSVKYFTEVQTMSRQFVVDDKIVWIEISGMPLGAWSAVEFKKVAAGQVEVIIKDMKHRVEVKEIGSWVPNLNALSERADEDDLEDSSSEKDSSSSGPEVEEGEIPQFHMANNDEGIVEDVQSVEEVQPTYERTKWGDQQHGGQNVNSEKETSPGNEDCVLESAGNSEGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G136190`
TK1151 ID	TkA01G136190
OH-1004 ID	LXL04_006431
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	40.200
Protein coverage (%)	TK1151 75.556 / OH-1004 16.614 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G136190`
Location	Chr01:34564648-34566346 (-)
Description	Similar to LINE-1 reverse transcriptase homolog
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006431` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0032197 retrotransposition Biological Process GO:0090304 nucleic acid metabolic process Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003824 catalytic activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0004523 RNA-DNA hybrid ribonuclease activity Molecular Function GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.524

Rank 1 · TkA01G136190 · TK1151

Nucleus0.476

Rank 2 · TkA01G136190 · TK1151

Cell membrane0.072

Rank 3 · TkA01G136190 · TK1151

Endoplasmic reticulum0.049

Rank 4 · TkA01G136190 · TK1151

Mitochondrion0.042

Rank 5 · TkA01G136190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01196Ribosomal_L1723-68 aa

PF01196Ribosomal_L17274-312 aa

PF01196Ribosomal_L17328-343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G136190	`PF01196`	Ribosomal_L17	23	68	0.31	12.6
TkA01G136190	`PF01196`	Ribosomal_L17	274	312	0.31	12.6
TkA01G136190	`PF01196`	Ribosomal_L17	328	343	0.31	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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