TkA01G128750 | RubberDandelionOmics

Gene overview

TkA01G128750

Reference: TK1151 Chr: Chr01 Coordinates: 32532485-32535854 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

939 bp · TkA01G128750|TK1151|cDNA

GAACCGCCATGGCTTGACGATCTAGCAGACGACCTCCGGAGTATCAGCTTCAACTCAACCACCACTACCACCGCGACCGATATTAACCGTAGCACCAGCTCCGGATCCGAAACCACTTGGACCACCGCTACCTCCTCCGCCCGCCACAACCTCCAACCCCCTGTATTAATACCGCTACGAAACCCTCTGCGCCTTCCGTCGACTCATCCTGGGACACCGTTTGTCAATCTGGATCTGAATCAGGACGGCAACCTTACCCT...

CDS

Download CDS FASTA

672 bp · TkA01G128750|TK1151|CDS

GAACCGCCATGGCTTGACGATCTAGCAGACGACCTCCGGAGTATCAGCTTCAACTCAACCACCACTACCACCGCGACCGATATTAACCGTAGCACCAGCTCCGGATCCGAAACCACTTGGACCACCGCTACCTCCTCCGCCCGCCACAACCTCCAACCCCCTGTATTAATACCGCTACGAAACCCTCTGCGCCTTCCGTCGACTCATCCTGGGACACCGTTTGTCAATCTGGATCTGAATCAGGACGGCAACCTTACCCT...

Protein

Download Protein FASTA

223 aa · TkA01G128750|TK1151|PROTEIN

EPPWLDDLADDLRSISFNSTTTTTATDINRSTSSGSETTWTTATSSARHNLQPPVLIPLRNPLRLPSTHPGTPFVNLDLNQDGNLTLSDIRFLHRLGAGDIGSVYLAKLKCSPSMTSAALFAVKVMDKRELASRNKEGRSRTEREILEVLDHPFLPTLYASLESPKWSCLLTDFCPGGDLHVLRQRQPCKRFRSRPSGAHVLCVRSDRSSRIPSHVGNCLPRS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G128750`
TK1151 ID	TkA01G128750
OH-1004 ID	LXL04_013149
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	72.100
Protein coverage (%)	TK1151 86.099 / OH-1004 40.693 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G128750

Location Chr01:32532485-32535854 (-)

Description Similar to D6PKL2: Serine/threonine-protein kinase D6PKL2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47750`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484
`At5g55910`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	The polarly localized D6 PROTEIN KINASE is required for efficient auxin transport in Arabidopsis thaliana.2009 · DOI: 10.1242/dev.028365 D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484 Arabidopsis D6PK is a lipid domain-dependent mediator of root epidermal planar polarity.2015 · DOI: 10.1038/nplants.2015.162
`At4g26610`	Protein kinase that regulates the auxin transport activity of PIN auxin efflux facilitators by direct phosphorylation.	D6PK AGCVIII kinases are required for auxin transport and phototropic hypocotyl bending in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111484
`At3g12690`	Functions redundantly with AGC1-7 as signaling component in the pollen tube.	Two Arabidopsis AGC kinases are critical for the polarized growth of pollen tubes.2009 · DOI: 10.1111/j.1365-313x.2009.03792.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013149 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009555 pollen development Biological Process

GO:0009630 gravitropism Biological Process

GO:0009638 phototropism Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010540 basipetal auxin transport Biological Process

GO:0048766 root hair initiation Biological Process

GO:0062075 pollen aperture formation Biological Process

GO:2000114 regulation of establishment of cell polarity Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G27580

ath:AT5G47750

ath:AT5G55910

dosa:Os06g0291600

osa:4340792

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.510

Rank 1 · TkA01G128750 · TK1151

Nucleus0.410

Rank 2 · TkA01G128750 · TK1151

Cell membrane0.110

Rank 3 · TkA01G128750 · TK1151

Mitochondrion0.063

Rank 4 · TkA01G128750 · TK1151

Endoplasmic reticulum0.056

Rank 5 · TkA01G128750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00404Dockerin_117-30 aa

PF13499EF-hand_774-100 aa

PF00404Dockerin_175-95 aa

PF07714PK_Tyr_Ser-Thr91-186 aa

PF00069Pkinase93-186 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G128750	`PF00404`	Dockerin_1	17	30	0.18	12.7
TkA01G128750	`PF13499`	EF-hand_7	74	100	0.23	12.6
TkA01G128750	`PF00404`	Dockerin_1	75	95	0.18	12.7
TkA01G128750	`PF07714`	PK_Tyr_Ser-Thr	91	186	1.3e-07	31.9
TkA01G128750	`PF00069`	Pkinase	93	186	5.4e-10	39.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39183`	Arabidopsis thaliana	sp\|Q39183\|D6KL2_ARATH Serine/threonine-protein kinase D6PKL2	61.600%	Swiss-Prot	Medium
`Q9FG74`	Arabidopsis thaliana	sp\|Q9FG74\|D6PK_ARATH Serine/threonine-protein kinase D6PK	56.600%	Swiss-Prot	Medium
`Q9SUA3`	Arabidopsis thaliana	sp\|Q9SUA3\|D6KL1_ARATH Serine/threonine-protein kinase D6PKL1	56.600%	Swiss-Prot	Medium
`Q9LTW5`	Arabidopsis thaliana	sp\|Q9LTW5\|AGC15_ARATH Serine/threonine-protein kinase AGC1-5	51.500%	Swiss-Prot	Medium

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