TkA01G128570 | RubberDandelionOmics

Gene overview

TkA01G128570

Reference: TK1151 Chr: Chr01 Coordinates: 32474226-32476139 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1342 bp · TkA01G128570|TK1151|cDNA

TTGGCTTTAAGGCTATAGGGGCAGGGATCGAGGTGTTAACGGGCTATGTTATATCCGCCCCTCCAGGAGCAGAGCTGAGCACCATCGCAAATCGACAATCTATTTCCAGCCTCCTGCGACCACCATCGAAGCGGCGGCAACGCAGCTCCACCAGTCGATTTCCAGCCTCCAGTGCACACAATCGCAGCGGCGGGGACGCAGCCCCACCATCGATTTGTCTATCAGTATATCTTCACCAGTTTGAGATACATACACGGAGG...

CDS

Download CDS FASTA

846 bp · TkA01G128570|TK1151|CDS

ATGATCGTGGCACTAAATTCCACTTTGTGCTCTTCAATTCCACCATGGCCTATCCGCTCTCAAAGAACCACATCACAAAAAGCATCAGTCTCACAGATCACCAATTCTGAATCCAGCTCATTAATCCAACATACCACTACAAGAAGATGTGAATGTTACGATGTATACAAAGAGGTGGTTCCGTTTGATAAAGCATGGGCATGGCAACAATCGATTGTTGAAAAAAGAAAATCATTGATTGACATTAATGAAGATGATTC...

Protein

Download Protein FASTA

281 aa · TkA01G128570|TK1151|PROTEIN

MIVALNSTLCSSIPPWPIRSQRTTSQKASVSQITNSESSSLIQHTTTRRCECYDVYKEVVPFDKAWAWQQSIVEKRKSLIDINEDDSDTLIILQHQPVYTLGTASTENNLNFDIKDSPLPLYQTERGGEVTYHGPGQIVMYPILNLRYQKMDLHWYLRALEEVVIRVLFSTFSLKASRIEGLTGVWVGEKKLAAIGIRVSRWVTYHGLALNVCTDLSPFNRIIPCGIKDRGVESIKGILNESSSTTCYDDSKLIDIAHDS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G128570`
TK1151 ID	TkA01G128570
OH-1004 ID	LXL04_004652
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 98.932 / OH-1004 96.864 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G128570

Location Chr01:32474226-32476139 (-)

Description Similar to LIP2P2: Octanoyltransferase LIP2p2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31050`	Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes.	Identification of an Arabidopsis cDNA encoding a lipoyltransferase located in plastids.2001 · DOI: 10.1016/s0014-5793(01)02932-5 Two redundant octanoyltransferases and one obligatory lipoyl synthase provide protein-lipoylation autonomy to plastids of Arabidopsis.2014 · DOI: 10.1111/plb.12028
`At1g47578`	Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes.	Two redundant octanoyltransferases and one obligatory lipoyl synthase provide protein-lipoylation autonomy to plastids of Arabidopsis.2014 · DOI: 10.1111/plb.12028

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004652 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009249 protein lipoylation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0033819 lipoyl(octanoyl) transferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G47578

ath:AT4G31050

ava:Ava_3883

syc:syc1750_c

syf:Synpcc7942_2353

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.884

Rank 1 · TkA01G128570 · TK1151

Mitochondrion0.148

Rank 2 · TkA01G128570 · TK1151

Cytoplasm0.097

Rank 3 · TkA01G128570 · TK1151

Peroxisome0.046

Rank 4 · TkA01G128570 · TK1151

Nucleus0.040

Rank 5 · TkA01G128570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21948LplA-B_cat64-243 aa

PF12196hNIFK_binding72-94 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G128570	`PF21948`	LplA-B_cat	64	243	2.2e-42	146.0
TkA01G128570	`PF12196`	hNIFK_binding	72	94	0.0096	16.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q948J9`	Arabidopsis thaliana	sp\|Q948J9\|LIP2P_ARATH Octanoyltransferase LIP2p, chloroplastic	67.400%	Swiss-Prot	High
`P0C7R2`	Arabidopsis thaliana	sp\|P0C7R2\|LI2P2_ARATH Octanoyltransferase LIP2p2, chloroplastic	63.700%	Swiss-Prot	High

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