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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G124810
Reference: TK1151 Chr: Chr01 Coordinates: 31531498-31533862 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1631 bp · TkA01G124810|TK1151|cDNA

CCGCCACCACTTATGTCTTTTTCTCGAACACAATTAAACGCACCTTAAAGGCATAAATAAAGATAGAAAGAAAGGCAAAAGGACTTCACCAAACCATTATACTTTGATAAGTAAAATCCACCGTTTCTCTTTCTCACCCATTTAATCTCCCTTCTCTTTCCCTCTCTTTGTGGCCATAAAACACTATGTGCTTTGAAGCTCCACCGTTGTTTGAATGGCTCAAGCCATCTCCTCCTTCTACTTCATCGTCCTCTTCACAT...

CDS

Download CDS FASTA

894 bp · TkA01G124810|TK1151|CDS

ATGTGCTTTGAAGCTCCACCGTTGTTTGAATGGCTCAAGCCATCTCCTCCTTCTACTTCATCGTCCTCTTCACATGACACCATGATGTTCTCTAAAGATCAAGAAACTATTCAGTGCTTACCCCTACTTAGTCGACTTATCAACCAAGATGAAAAAGATAGGGTTTTGAAGATCAAAGAAGAAGATCTTAACATCGAGAAAGTGACAGTAACACTGCATATCGGATTGCCTAGTTATGCAGGAGATTCACCGGTCACTAA...

Protein

Download Protein FASTA

297 aa · TkA01G124810|TK1151|PROTEIN

MCFEAPPLFEWLKPSPPSTSSSSSHDTMMFSKDQETIQCLPLLSRLINQDEKDRVLKIKEEDLNIEKVTVTLHIGLPSYAGDSPVTNELFEEFKEEDEIKSDMKMVKLNNHHSDHDQTRFWIPTPSQILVGPMQFVCSLCNKTFNRYNNMQMHMWGHGSEYRKGPESLKGIQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGDKPFTCRKYCTKRFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G124810
TK1151 IDTkA01G124810
OH-1004 IDLXL04_004686
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G124810
LocationChr01:31531498-31533862 (+)
DescriptionSimilar to WIP3: Zinc finger protein WIP3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08290 Probable transcriptional regulator. No verified direct reference in this release
At1g51220 Probable transcriptional regulator. No verified direct reference in this release
At3g20880 Probable transcriptional regulator. No verified direct reference in this release
At3g57670 Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. No verified direct reference in this release
At1g13290 Probable transcriptional regulator (Probable). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004686 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001709 cell fate determination Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0010500 transmitting tissue development Biological Process
GO:0010588 cotyledon vascular tissue pattern formation Biological Process
GO:0048364 root development Biological Process
GO:0048367 shoot system development Biological Process
GO:0080022 primary root development Biological Process
KEGG gene cross-reference
ath:AT1G08290
ath:AT1G13290
ath:AT1G51220
ath:AT3G20880
ath:AT3G57670
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.978
Rank 1 · TkA01G124810 · TK1151
Cytoplasm0.077
Rank 2 · TkA01G124810 · TK1151
Cell membrane0.020
Rank 3 · TkA01G124810 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA01G124810 · TK1151
Plastid0.010
Rank 5 · TkA01G124810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13465zf-H2C2_2108-119 aa
PF13465zf-H2C2_2132-146 aa
PF22995C2CH-3rd_BIRD-IDD134-144 aa
PF12171zf-C2H2_jaz134-154 aa
PF23107Zf-C2H2_ZNF451_C134-162 aa
PF13912zf-C2H2_6135-154 aa
PF00096zf-C2H2135-154 aa
PF23118zf-C2H2_STOP2_C135-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G124810PF13465zf-H2C2_21081190.07714.1
TkA01G124810PF13465zf-H2C2_21321460.07714.1
TkA01G124810PF22995C2CH-3rd_BIRD-IDD1341445e-1039.6
TkA01G124810PF12171zf-C2H2_jaz1341540.009316.8
TkA01G124810PF23107Zf-C2H2_ZNF451_C1341620.1713.2
TkA01G124810PF13912zf-C2H2_61351549.3e-0523.0
TkA01G124810PF00096zf-C2H21351540.0007920.5
TkA01G124810PF23118zf-C2H2_STOP2_C1351490.0008719.5
TkA01G124810PF12874zf-met1351540.004518.0
TkA01G124810PF13894zf-C2H2_41351570.004518.3
TkA01G124810PF13465zf-H2C2_21491580.07714.1
TkA01G124810PF25422DUF78921782370.211.8
TkA01G124810PF23115zf-C2H2_STOP2_3rd1812154.7e-1968.8
TkA01G124810PF22996C2H2-2nd_BIRD-IDD1922140.02515.3
TkA01G124810PF00096zf-C2H21992140.0007920.5
TkA01G124810PF13894zf-C2H2_42012140.004518.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SGD1Arabidopsis thalianasp|Q9SGD1|ZWIP3_ARATH Zinc finger protein WIP356.000%Swiss-ProtHigh
Q8W031Arabidopsis thalianasp|Q8W031|ZWIP5_ARATH Zinc finger protein WIP557.800%Swiss-ProtHigh
Q8W030Arabidopsis thalianasp|Q8W030|ZWIP4_ARATH Zinc finger protein WIP462.200%Swiss-ProtHigh
Q9SVY1Arabidopsis thalianasp|Q9SVY1|ZWIP2_ARATH Zinc finger protein WIP279.000%Swiss-ProtMedium
Q9FX68Arabidopsis thalianasp|Q9FX68|ZWIP6_ARATH Zinc finger protein WIP663.800%Swiss-ProtHigh

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