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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G121770
Reference: TK1151 Chr: Chr01 Coordinates: 30841956-30843227 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1272 bp · TkA01G121770|TK1151|cDNA

ATGGATCATGTTCCCGTTGAAGTAATCGGCAACATACTCTCCCGTCTCGGGGCTGCGAGAGACGTCGTAATTGCTTCCACAACATGTAAAAAATGGCGAGAAGCTTGTCACCGGCATCTTCACATGCTCTCTTTTAACTCCGACGATTGGCCCGTTTTCCGTGATCTCACAACCAGCAGACTCGAAATATTAATCACCCAAACCATCTTCCAAACGAAAGGATTACGAGGTCTCTCCATTTTAATGGACGCGTTCGACGA...

CDS

Download CDS FASTA

1272 bp · TkA01G121770|TK1151|CDS

ATGGATCATGTTCCCGTTGAAGTAATCGGCAACATACTCTCCCGTCTCGGGGCTGCGAGAGACGTCGTAATTGCTTCCACAACATGTAAAAAATGGCGAGAAGCTTGTCACCGGCATCTTCACATGCTCTCTTTTAACTCCGACGATTGGCCCGTTTTCCGTGATCTCACAACCAGCAGACTCGAAATATTAATCACCCAAACCATCTTCCAAACGAAAGGATTACGAGGTCTCTCCATTTTAATGGACGCGTTCGACGA...

Protein

Download Protein FASTA

423 aa · TkA01G121770|TK1151|PROTEIN

MDHVPVEVIGNILSRLGAARDVVIASTTCKKWREACHRHLHMLSFNSDDWPVFRDLTTSRLEILITQTIFQTKGLRGLSILMDAFDEFSASAVIAWLMYTRETLRCLFYNVRTTPNVNILDICGRQKLELLALAHNSISGVEPNYQRFPFLKSLSLSHVSISSLDLNLLLTACPNIEFLGLISPEIAVTDAQVTVELTSQTLKRVYVKAISLDKFSLEADNLEKIHLEDCAFELFELTGKGTLKHFKMHDVSILHLDIFD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G121770
TK1151 IDTkA01G121770
OH-1004 IDLXL04_018327
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)58.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G121770
LocationChr01:30841956-30843227 (+)
DescriptionSimilar to At1g67190: F-box/LRR-repeat protein At1g67190
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g67190 F-box/LRR-repeat protein At1g67190. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018327 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G10780
ath:AT1G67190
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.741
Rank 1 · TkA01G121770 · TK1151
Cytoplasm0.249
Rank 2 · TkA01G121770 · TK1151
Cell membrane0.064
Rank 3 · TkA01G121770 · TK1151
Endoplasmic reticulum0.061
Rank 4 · TkA01G121770 · TK1151
Plastid0.028
Rank 5 · TkA01G121770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like2-39 aa
PF00646F-box3-38 aa
PF24758LRR_At5g56370126-230 aa
PF12799LRR_4127-164 aa
PF13855LRR_8127-167 aa
PF00560LRR_1127-144 aa
PF23622LRR_At1g61320_AtMIF1147-252 aa
PF12799LRR_4151-181 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G121770PF12937F-box-like2398.8e-0832.5
TkA01G121770PF00646F-box3380.0003721.0
TkA01G121770PF24758LRR_At5g563701262303e-1040.9
TkA01G121770PF12799LRR_41271640.0003421.5
TkA01G121770PF13855LRR_81271670.910.1
TkA01G121770PF00560LRR_11271441.210.3
TkA01G121770PF23622LRR_At1g61320_AtMIF11472520.0215.0
TkA01G121770PF12799LRR_41511810.0003421.5
TkA01G121770PF07723LRR_21511740.02216.1
TkA01G121770PF29594LRR_SKP21511810.1112.5
TkA01G121770PF00560LRR_11511671.210.3
TkA01G121770PF12384Peptidase_A2B1662150.2511.6
TkA01G121770PF13599Pentapeptide_41992560.08113.7
TkA01G121770PF29594LRR_SKP21992230.1112.5
TkA01G121770PF12799LRR_42202300.0003421.5
TkA01G121770PF13855LRR_82202260.910.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZW88Arabidopsis thalianasp|Q9ZW88|FBL34_ARATH F-box/LRR-repeat protein At1g6719068.800%Swiss-ProtHigh

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