TkA01G119440 | RubberDandelionOmics

Gene overview

TkA01G119440

Reference: TK1151 Chr: Chr01 Coordinates: 30263717-30265377 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

664 bp · TkA01G119440|TK1151|cDNA

TGATAGATGGTTGAAACACTTATATCTATTCTATGGTTTGTAGCATGTTGCATTCAATGCTTGAAACACGTGGGGGAGATAAGGTGAACAATTGTGCTTTTATTTCCCCGACTGAGATTCAGGCGCCTTTATGCAAGTCAAATGGTGGTGGTGTCATAAGTTACCTTGTTGATACAATGAGCTTCCATCAAGAGAAACAGTTTTTCATCGCACCCTATTGGCAAGGGTTGCATTGGATTTTGTTTGTAATTTGTCCTAAT...

CDS

Download CDS FASTA

303 bp · TkA01G119440|TK1151|CDS

ATGGTTTGTAGCATGTTGCATTCAATGCTTGAAACACGTGGGGGAGATAAGGTGAACAATTGTGCTTTTATTTCCCCGACTGAGATTCAGGCGCCTTTATGCAAGTCAAATGGTGGTGGTGTCATAAGTTACCTTGTTGATACAATGAGCTTCCATCAAGAGAAACAGTTTTTCATCGCACCCTATTGGCAAGGGTTGCATTGGATTTTGTTTGTAATTTGTCCTAATCAACGCACAGGGTATATTTTGGATTCTAACAA...

Protein

Download Protein FASTA

100 aa · TkA01G119440|TK1151|PROTEIN

MVCSMLHSMLETRGGDKVNNCAFISPTEIQAPLCKSNGGGVISYLVDTMSFHQEKQFFIAPYWQGLHWILFVICPNQRTGYILDSNKNSDENTAENYLVV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G119440`
TK1151 ID	TkA01G119440
OH-1004 ID	LXL04_021942
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.900
Protein coverage (%)	TK1151 96.000 / OH-1004 3.790 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G119440`
Location	Chr01:30263717-30265377 (+)
Description	Similar to HSP70-1: Heat shock 70 kDa protein 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_021942` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0006457 protein folding Biological Process GO:0006950 response to stress Biological Process GO:0009408 response to heat Biological Process GO:0009615 response to virus Biological Process GO:0009617 response to bacterium Biological Process GO:0010187 negative regulation of seed germination Biological Process GO:0010286 heat acclimation Biological Process GO:0042026 protein refolding Biological Process GO:0042742 defense response to bacterium Biological Process GO:0050832 defense response to fungus Biological Process GO:0090332 stomatal closure Biological Process
KEGG gene cross-reference	ath:AT5G02490 ath:AT5G02500 sly:101247772 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.914

Rank 1 · TkA01G119440 · TK1151

Cytoplasm0.237

Rank 2 · TkA01G119440 · TK1151

Cell membrane0.018

Rank 3 · TkA01G119440 · TK1151

Endoplasmic reticulum0.016

Rank 4 · TkA01G119440 · TK1151

Mitochondrion0.014

Rank 5 · TkA01G119440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22102ElaD-SseL-like_C43-96 aa

PF02902Peptidase_C4859-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G119440	`PF22102`	ElaD-SseL-like_C	43	96	0.13	12.8
TkA01G119440	`PF02902`	Peptidase_C48	59	92	0.00014	22.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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