TkA01G119130 | RubberDandelionOmics

Gene overview

TkA01G119130

Reference: TK1151 Chr: Chr01 Coordinates: 30183126-30184167 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

567 bp · TkA01G119130|TK1151|cDNA

ATGAGTCGATTGAAGATGCAAGAGCCTCATGTCACGGGGACAAAATCTTTCTCCCGACTTGCTGAAGAAGAGGCACCCAAAAATGACGGTGTATACCCTTCACGAGGAGAAATATTCCGAATTGCTCATACTCGTAAAGATGGAAGTAATGTTAATGAAAATGTAGCTACAATTTTGGCGGCTTACCTTTTCCAACAACACGGAGAAAAAACAGATGGAACCCCTAAAGTACCTCCATATCCCATTCCTACTGGAAATTA...

CDS

Download CDS FASTA

567 bp · TkA01G119130|TK1151|CDS

ATGAGTCGATTGAAGATGCAAGAGCCTCATGTCACGGGGACAAAATCTTTCTCCCGACTTGCTGAAGAAGAGGCACCCAAAAATGACGGTGTATACCCTTCACGAGGAGAAATATTCCGAATTGCTCATACTCGTAAAGATGGAAGTAATGTTAATGAAAATGTAGCTACAATTTTGGCGGCTTACCTTTTCCAACAACACGGAGAAAAAACAGATGGAACCCCTAAAGTACCTCCATATCCCATTCCTACTGGAAATTA...

Protein

Download Protein FASTA

188 aa · TkA01G119130|TK1151|PROTEIN

MSRLKMQEPHVTGTKSFSRLAEEEAPKNDGVYPSRGEIFRIAHTRKDGSNVNENVATILAAYLFQQHGEKTDGTPKVPPYPIPTGNYNVSPEQLASMTRDHDMSALQNFDGVKGLSEMLKTNPDKGIDDDESNILDRKNVFGSNTYHRKKGRSFWRFLLDACRDTTLIILMVAAAASLALGIKTEVSE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G119130`
TK1151 ID	TkA01G119130
OH-1004 ID	LXL04_007108
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	77.700
Protein coverage (%)	TK1151 98.936 / OH-1004 45.263 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G119130

Location Chr01:30183126-30184167 (+)

Description Similar to ACA8: Calcium-transporting ATPase 8, plasma membrane-type

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57110`	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell.	No verified direct reference in this release
`At4g29900`	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into the endoplasmic reticulum.	No verified direct reference in this release
`At3g21180`	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0605500`	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles (By similarity).	No verified direct reference in this release
`Os12g0136900`	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007108 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009624 response to nematode Biological Process

GO:0051480 regulation of cytosolic calcium ion concentration Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0005388 P-type calcium transporter activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

KEGG gene cross-reference

ath:AT4G29900

ath:AT5G57110

dosa:Os04g0605500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.562

Rank 1 · TkA01G119130 · TK1151

Nucleus0.338

Rank 2 · TkA01G119130 · TK1151

Cell membrane0.132

Rank 3 · TkA01G119130 · TK1151

Extracellular0.085

Rank 4 · TkA01G119130 · TK1151

Mitochondrion0.070

Rank 5 · TkA01G119130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03004Transposase_242-62 aa

PF00690Cation_ATPase_N111-177 aa

PF03004Transposase_24133-152 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G119130	`PF03004`	Transposase_24	2	62	1.8e-09	38.6
TkA01G119130	`PF00690`	Cation_ATPase_N	111	177	1.1e-13	51.3
TkA01G119130	`PF03004`	Transposase_24	133	152	1.8e-09	38.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LF79`	Arabidopsis thaliana	sp\|Q9LF79\|ACA8_ARATH Calcium-transporting ATPase 8, plasma membrane-type	47.700%	Swiss-Prot	Medium
`Q9SZR1`	Arabidopsis thaliana	sp\|Q9SZR1\|ACA10_ARATH Calcium-transporting ATPase 10, plasma membrane-type	53.400%	Swiss-Prot	Medium
`Q9LU41`	Arabidopsis thaliana	sp\|Q9LU41\|ACA9_ARATH Calcium-transporting ATPase 9, plasma membrane-type	49.600%	Swiss-Prot	Medium
`Q7X8B5`	Oryza sativa subsp. japonica	sp\|Q7X8B5\|ACA5_ORYSJ Calcium-transporting ATPase 5, plasma membrane-type	48.600%	Swiss-Prot	Medium
`Q2QY12`	Oryza sativa subsp. japonica	sp\|Q2QY12\|ACA9_ORYSJ Probable calcium-transporting ATPase 9, plasma membrane-type	44.400%	Swiss-Prot	Medium

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