TkA01G116330 | RubberDandelionOmics

Gene overview

TkA01G116330

Reference: TK1151 Chr: Chr01 Coordinates: 29452273-29456371 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2247 bp · TkA01G116330|TK1151|cDNA

TTTAATCAAACATTGTAAATTCGTATATATTACCCAAAAAATTAAAAAAAATACGTTTGTAGGGCAAGCTTGGTAAGCCAAAAACATATAACATGAGATGAATACATTACCCTGTTCGTCGTTGCACCGACCCATCTACCATCATCATCTCTCTTCTAATTTCCGATTGCTTCCATTGCGCCCTAAACATTCCTCATCATCGATCATACCACTTGCAGGTAACCCGCATTGCCCTCAGAGAAAACTGTGTTACAGAAAGC...

CDS

Download CDS FASTA

1605 bp · TkA01G116330|TK1151|CDS

ATGGGAGGAAAATGGGAAGTGTGTATACCATATTCTTCTTCTACAAAAGAAGAACGCGTGATTGTAAAAGCCTTTGAAAGTCAAATGCCGGAGTCAAACATTTTTGAGCCTGAAATTGAATCCCCATTGATTAAGCCTCTTATGGACCGTGATCTTGCAGCATTAAAGCTTCAGAAAACATATAAAAGCTTCAGAACGAGAAGACAGTTGGCTGATTGTGCAATACTCGTTGAACATAGATGGTGGAAGCTTCTCGATTT...

Protein

Download Protein FASTA

534 aa · TkA01G116330|TK1151|PROTEIN

MGGKWEVCIPYSSSTKEERVIVKAFESQMPESNIFEPEIESPLIKPLMDRDLAALKLQKTYKSFRTRRQLADCAILVEHRWWKLLDFAVLKCSSVSFFEVEKPETAVSRWSRARTRAAKVGKGLSHHAKACKLALQHWLEAIDPRHRYGHNLHFYYVRWLHCQSRQPFFYWLDIGEGKEVNIERCPRPKLHQQCIKYLSPIEREDFEATVEDGKFIYKLSRKLIDTRGPTGVKWIFVLSTSNILYVGIKLKGKFQHSSFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G116330`
TK1151 ID	TkA01G116330
OH-1004 ID	LXL04_004741
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G116330

Location Chr01:29452273-29456371 (-)

Description Similar to IQM2: IQ domain-containing protein IQM2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13600`	May be involved in biotic and abiotic stress responses.	No verified direct reference in this release
`At3g58480`	May be involved in biotic and abiotic stress responses.	No verified direct reference in this release
`At4g33050`	Involved in the modulation of stomatal movement.	AtIQM1, a novel calmodulin-binding protein, is involved in stomatal movement in Arabidopsis.2012 · DOI: 10.1007/s11103-012-9915-0
`At2g26190`	May be involved in biotic and abiotic stress responses.	No verified direct reference in this release
`At3g52870`	May be involved in biotic and abiotic stress responses.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004741 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT2G26190

ath:AT3G13600

ath:AT3G52870

ath:AT3G58480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.477

Rank 1 · TkA01G116330 · TK1151

Nucleus0.368

Rank 2 · TkA01G116330 · TK1151

Cell membrane0.285

Rank 3 · TkA01G116330 · TK1151

Endoplasmic reticulum0.056

Rank 4 · TkA01G116330 · TK1151

Plastid0.051

Rank 5 · TkA01G116330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30383IQM_M202-295 aa

PF02375JmjN288-304 aa

PF02375JmjN480-487 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G116330	`PF30383`	IQM_M	202	295	5.6e-39	132.9
TkA01G116330	`PF02375`	JmjN	288	304	0.24	12.0
TkA01G116330	`PF02375`	JmjN	480	487	0.24	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LHN9`	Arabidopsis thaliana	sp\|Q9LHN9\|IQM2_ARATH IQ domain-containing protein IQM2	55.300%	Swiss-Prot	High
`Q9M2G8`	Arabidopsis thaliana	sp\|Q9M2G8\|IQM6_ARATH IQ domain-containing protein IQM6	58.600%	Swiss-Prot	High
`O82645`	Arabidopsis thaliana	sp\|O82645\|IQM1_ARATH IQ domain-containing protein IQM1	46.600%	Swiss-Prot	Medium
`O64851`	Arabidopsis thaliana	sp\|O64851\|IQM4_ARATH IQ domain-containing protein IQM4	46.400%	Swiss-Prot	Medium
`Q9LFA4`	Arabidopsis thaliana	sp\|Q9LFA4\|IQM3_ARATH IQ domain-containing protein IQM3	43.800%	Swiss-Prot	Medium

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