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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G116260
Reference: TK1151 Chr: Chr01 Coordinates: 29435417-29438255 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1911 bp · TkA01G116260|TK1151|cDNA

ATGTTGCTCCAAAGGAATGCTACGAAAATTCGATCTTTATCAGACGCAATCAATGTCTCCGGAGCTCTCAGTACTACGTGTTCTTCATGGTCGGAGAACATTCAACCACTCGAGCATGGTAATGGTATTTCTCTGGATGATGTTACCTACGCCAAACTGATTCAATCATCCACGCAATCAGGATGTTCAACTCACGGGAAACTAGCTCAATCGCATATGGTGAAAACGGGTTACACTCCAACCTTATTTTTACACAATAC...

CDS

Download CDS FASTA

1911 bp · TkA01G116260|TK1151|CDS

ATGTTGCTCCAAAGGAATGCTACGAAAATTCGATCTTTATCAGACGCAATCAATGTCTCCGGAGCTCTCAGTACTACGTGTTCTTCATGGTCGGAGAACATTCAACCACTCGAGCATGGTAATGGTATTTCTCTGGATGATGTTACCTACGCCAAACTGATTCAATCATCCACGCAATCAGGATGTTCAACTCACGGGAAACTAGCTCAATCGCATATGGTGAAAACGGGTTACACTCCAACCTTATTTTTACACAATAC...

Protein

Download Protein FASTA

636 aa · TkA01G116260|TK1151|PROTEIN

MLLQRNATKIRSLSDAINVSGALSTTCSSWSENIQPLEHGNGISLDDVTYAKLIQSSTQSGCSTHGKLAQSHMVKTGYTPTLFLHNTLLNMYFKCNESDLALQLFDEMPERNVVSWNSIVSGYIRLGQYTSAKQAISKARNTKVNLSKHTYASMLTICAQTDDLELGKVIHSLIIVTGVGLGIDAFLTNPIIAMYSKCGRIDQARLTFDKCDQLDDVSWNSMISGYVQAGLHNEMLEKSLNLFCEMQRDGFKPSEFTFST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G116260
TK1151 IDTkA01G116260
OH-1004 IDLXL04_004744
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)75.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G116260
LocationChr01:29435417-29438255 (+)
DescriptionSimilar to PCMP-E89: Pentatricopeptide repeat-containing protein At3g13880
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g13880 Pentatricopeptide repeat-containing protein At3g13880. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At2g22070 Pentatricopeptide repeat-containing protein At2g22070. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004744 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:1900864 mitochondrial RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G27610
ath:AT3G13880
ath:AT4G33170
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.705
Rank 1 · TkA01G116260 · TK1151
Plastid0.159
Rank 2 · TkA01G116260 · TK1151
Nucleus0.053
Rank 3 · TkA01G116260 · TK1151
Cytoplasm0.032
Rank 4 · TkA01G116260 · TK1151
Cell membrane0.006
Rank 5 · TkA01G116260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_241-55 aa
PF12854PPR_141-55 aa
PF13812PPR_341-92 aa
PF17177PPR_long71-112 aa
PF23276TPR_2472-113 aa
PF13812PPR_373-120 aa
PF12854PPR_177-108 aa
PF29407CFAP70_TPR_C82-140 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G116260PF13041PPR_241552.3e-42143.6
TkA01G116260PF12854PPR_141558.4e-2174.1
TkA01G116260PF13812PPR_341921.1e-1454.9
TkA01G116260PF17177PPR_long711124.8e-1039.9
TkA01G116260PF23276TPR_24721131.6e-0628.8
TkA01G116260PF13812PPR_3731201.1e-1454.9
TkA01G116260PF12854PPR_1771088.4e-2174.1
TkA01G116260PF29407CFAP70_TPR_C821400.1112.7
TkA01G116260PF13041PPR_2841132.3e-42143.6
TkA01G116260PF01535PPR851131.4e-33113.4
TkA01G116260PF29070MSC6_N871634.6e-0936.6
TkA01G116260PF13428TPR_14871080.002918.9
TkA01G116260PF13181TPR_8881050.005417.5
TkA01G116260PF29978ATP18_TPR1021170.113.2
TkA01G116260PF13041PPR_21111592.3e-42143.6
TkA01G116260PF12854PPR_11111238.4e-2174.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LRV9Arabidopsis thalianasp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protein At3g1388037.700%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial37.600%Swiss-ProtMedium
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365035.100%Swiss-ProtMedium
Q9SHZ8Arabidopsis thalianasp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g2207035.000%Swiss-ProtMedium
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317036.800%Swiss-ProtMedium

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