RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G115830
Reference: TK1151 Chr: Chr01 Coordinates: 29322722-29323954 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

807 bp · TkA01G115830|TK1151|cDNA

ATGGGGAATTCAACAAATCTTTTCTGGCACGAAAACACAGTTGGGAAAGCCGAACGCCAAAAGCTAATTAACCAACAAGGATGTGTTGTATGGATCACAGGTCTCAGTGGATCAGGTAAAAGTACACTTGCATGTTCATTAAACAGTGAACTATACTCTAGGGGAAAACTCTCCTACGTTCTTGATGGTGACAATCTTAGACATGGATTAAACAAAAACCTTGGATTCTCACCTGAAGATAGAACCGAAAACATTCGTCG...

CDS

Download CDS FASTA

615 bp · TkA01G115830|TK1151|CDS

ATGGGGAATTCAACAAATCTTTTCTGGCACGAAAACACAGTTGGGAAAGCCGAACGCCAAAAGCTAATTAACCAACAAGGATGTGTTGTATGGATCACAGGTCTCAGTGGATCAGGTAAAAGTACACTTGCATGTTCATTAAACAGTGAACTATACTCTAGGGGAAAACTCTCCTACGTTCTTGATGGTGACAATCTTAGACATGGATTAAACAAAAACCTTGGATTCTCACCTGAAGATAGAACCGAAAACATTCGTCG...

Protein

Download Protein FASTA

204 aa · TkA01G115830|TK1151|PROTEIN

MGNSTNLFWHENTVGKAERQKLINQQGCVVWITGLSGSGKSTLACSLNSELYSRGKLSYVLDGDNLRHGLNKNLGFSPEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLSDANFIEVFMNMPLEVCEARDCKGLYKLARAGKIKGFTGIDDPYEPPLNCEIMIEQKDGVCPTPCDMAGQVVSYLDENGFLHA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G115830
TK1151 IDTkA01G115830
OH-1004 IDLXL04_004750
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)97.600
Protein coverage (%)TK1151 100.000 / OH-1004 69.900
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G115830
LocationChr01:29322722-29323954 (+)
DescriptionSimilar to APK3: Adenylyl-sulfate kinase 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g03900 Catalyzes the synthesis of activated sulfate for the sulfation of secondary metabolites, including the glucosinolates.
Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014
At2g14750 Catalyzes the synthesis of activated sulfate.
Molecular and catalytic properties of Arabidopsis thaliana adenylyl sulfate (APS)-kinase.2001 · DOI: 10.1006/abbi.2001.2453
At4g39940 Catalyzes the synthesis of activated sulfate.
Molecular and catalytic properties of Arabidopsis thaliana adenylyl sulfate (APS)-kinase.2001 · DOI: 10.1006/abbi.2001.2453
Disruption of adenosine-5'-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites.2009 · DOI: 10.1105/tpc.109.065581
Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014
Interaction of glucosinolate content of Arabidopsis thaliana mutant lines and feeding and oviposition by generalist and specialist lepidopterans.2013 · DOI: 10.1016/j.phytochem.2012.11.006
At5g67520 Catalyzes the phosphorylation of adenosine 5'-phosphosulfate to 3'-phosphoadenylyl sulfate, which is the activated sulfate form for sulfation reactions.
Adenosine-5'-phosphosulfate kinase is essential for Arabidopsis viability.2010 · DOI: 10.1016/j.febslet.2009.11.014

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004750 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000103 sulfate assimilation Biological Process
GO:0016310 phosphorylation Biological Process
GO:0019344 L-cysteine biosynthetic process Biological Process
GO:0070814 hydrogen sulfide biosynthetic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0004020 adenylylsulfate kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT2G14750
ath:AT3G03900
ath:AT4G39940
ath:AT5G67520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.616
Rank 1 · TkA01G115830 · TK1151
Nucleus0.479
Rank 2 · TkA01G115830 · TK1151
Mitochondrion0.095
Rank 3 · TkA01G115830 · TK1151
Cell membrane0.039
Rank 4 · TkA01G115830 · TK1151
Endoplasmic reticulum0.030
Rank 5 · TkA01G115830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00437T2SSE16-50 aa
PF02562PhoH19-85 aa
PF00931NB-ARC20-50 aa
PF24883NPHP3_N21-56 aa
PF20720nSTAND321-60 aa
PF13555AAA_2923-45 aa
PF18766SWI2_SNF223-117 aa
PF00005ABC_tran25-82 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G115830PF00437T2SSE16500.1511.4
TkA01G115830PF02562PhoH19850.1112.7
TkA01G115830PF00931NB-ARC20500.05913.6
TkA01G115830PF24883NPHP3_N21560.001219.8
TkA01G115830PF20720nSTAND321600.003317.8
TkA01G115830PF13555AAA_2923450.001618.9
TkA01G115830PF18766SWI2_SNF2231170.06413.6
TkA01G115830PF00005ABC_tran25820.0006721.0
TkA01G115830PF01583APS_kinase261752.5e-70236.1
TkA01G115830PF13191AAA_1626670.06114.6
TkA01G115830PF06414Zeta_toxin26680.1312.3
TkA01G115830PF03193RsgA_GTPase26510.1712.4
TkA01G115830PF13481AAA_2527510.1912.0
TkA01G115830PF03308MeaB28600.02214.5
TkA01G115830PF13671AAA_33291418.6e-0730.1
TkA01G115830PF05729NACHT29530.01416.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SRW7Arabidopsis thalianasp|Q9SRW7|APK3_ARATH Adenylyl-sulfate kinase 378.200%Swiss-ProtHigh
Q43295Arabidopsis thalianasp|Q43295|APK1_ARATH Adenylyl-sulfate kinase 1, chloroplastic70.600%Swiss-ProtHigh
O49196Arabidopsis thalianasp|O49196|APK2_ARATH Adenylyl-sulfate kinase 2, chloroplastic65.800%Swiss-ProtHigh
Q84JF0Arabidopsis thalianasp|Q84JF0|APK4_ARATH Adenylyl-sulfate kinase 4, chloroplastic63.400%Swiss-ProtHigh

JBrowse

View in Genome Browser