TkA01G113410 | RubberDandelionOmics

Gene overview

TkA01G113410

Reference: TK1151 Chr: Chr01 Coordinates: 28778624-28779794 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

408 bp · TkA01G113410|TK1151|cDNA

ATGGTCTTAAAAAGGAGGGTTGTTGATCTTAATGAGTTGCTTAAGACAGCAATTGCTAAAGCTGGATACACCGGAAAGGTTGTCATTGGAATGGATGTTGCTGCATCTGAGTTTTATGCCGATAAGGGAAAGACCTATGATCTGAACTTCAAGGAAGTATTGATTTGTTATGTTGGTCTACTGATTCAGTTCTTAATTAGACCAGTTATTCATACACGCACATCAGGTATGACATCTCGTAAACGCTCAAACGATGATGA...

CDS

Download CDS FASTA

408 bp · TkA01G113410|TK1151|CDS

ATGGTCTTAAAAAGGAGGGTTGTTGATCTTAATGAGTTGCTTAAGACAGCAATTGCTAAAGCTGGATACACCGGAAAGGTTGTCATTGGAATGGATGTTGCTGCATCTGAGTTTTATGCCGATAAGGGAAAGACCTATGATCTGAACTTCAAGGAAGTATTGATTTGTTATGTTGGTCTACTGATTCAGTTCTTAATTAGACCAGTTATTCATACACGCACATCAGGTATGACATCTCGTAAACGCTCAAACGATGATGA...

Protein

Download Protein FASTA

135 aa · TkA01G113410|TK1151|PROTEIN

MVLKRRVVDLNELLKTAIAKAGYTGKVVIGMDVAASEFYADKGKTYDLNFKEVLICYVGLLIQFLIRPVIHTRTSGMTSRKRSNDDDDDFVYGDKGFRAIFESMILGSKLHISVIDLWETLLNHEEQRRNKNSTS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G113410`
TK1151 ID	TkA01G113410
OH-1004 ID	LXL04_013674
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.800
Protein coverage (%)	TK1151 99.259 / OH-1004 24.453 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G113410

Location Chr01:28778624-28779794 (-)

Description Similar to CAR5: Protein C2-DOMAIN ABA-RELATED 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0167300`	Enolase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013674 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0043547 positive regulation of GTPase activity Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:1901002 positive regulation of response to salt stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G48590

ath:AT3G17980

ath:AT5G37740

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.624

Rank 1 · TkA01G113410 · TK1151

Cytoplasm0.287

Rank 2 · TkA01G113410 · TK1151

Mitochondrion0.061

Rank 3 · TkA01G113410 · TK1151

Cell membrane0.061

Rank 4 · TkA01G113410 · TK1151

Endoplasmic reticulum0.057

Rank 5 · TkA01G113410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00113Enolase_C12-52 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G113410	`PF00113`	Enolase_C	12	52	9.9e-13	48.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42971`	Oryza sativa subsp. japonica	sp\|Q42971\|ENO_ORYSJ Enolase	92.700%	Swiss-Prot	Low

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