TkA01G113090 | RubberDandelionOmics

Gene overview

TkA01G113090

Reference: TK1151 Chr: Chr01 Coordinates: 28709498-28714470 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2796 bp · TkA01G113090|TK1151|cDNA

CTCCTTTTTAACTTCTGAAATTACAACGCCACTCACTCTCCCTCTACGGCTCTACCTAATTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATAGCAAATGGCGAAAGGAGTTAAGAGAGATATGAAGCAGTCAGAGGAAGCCATTGATTCGTCGGTACCTACTTCCGATTCCAAACAATCACCTCCGTCAAAGAAATCCAAACTCTCTTCAGCCACCGCCGCAGCCGAAGACGA...

CDS

Download CDS FASTA

2484 bp · TkA01G113090|TK1151|CDS

ATGGCGAAAGGAGTTAAGAGAGATATGAAGCAGTCAGAGGAAGCCATTGATTCGTCGGTACCTACTTCCGATTCCAAACAATCACCTCCGTCAAAGAAATCCAAACTCTCTTCAGCCACCGCCGCAGCCGAAGACGACACCCGTTTCACCGGAAAACCAGTTCCGGCTGACCAAGCCAGAGAAAAATGGCCTCATCGCTACCAATCCAAGAGCAGAGTCGTTATAGCTTCATCAAACGGTGAACTGAATGGAAAGGAGAT...

Protein

Download Protein FASTA

827 aa · TkA01G113090|TK1151|PROTEIN

MAKGVKRDMKQSEEAIDSSVPTSDSKQSPPSKKSKLSSATAAAEDDTRFTGKPVPADQAREKWPHRYQSKSRVVIASSNGELNGKEIIQAKCHYTKAVVDGVAFDLYDDAFVKAEEGHPDFIARIVEMFETVDKELYCSAQWFFRAEDTVIKSQAHLIDKRRVFYSEMKDDNPLDSILSKVKIVQLPPNVDLAEKEKALSSYDLYYDMQYSMPVTFTTLHKESLITESDESSVISDDDCLNVVVEKTNKKYANKTKINKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G113090`
TK1151 ID	TkA01G113090
OH-1004 ID	LXL04_004774
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G113090

Location Chr01:28709498-28714470 (+)

Description Similar to MET2A: DNA (cytosine-5)-methyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80740`	May be involved in the CpXpG methylation and in gene silencing.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0104900`	Involved in CpXpG DNA methylation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004774 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0032259 methylation Biological Process

GO:0044027 negative regulation of gene expression via chromosomal CpG island methylation Biological Process

GO:0141010 transposable element silencing by siRNA-mediated DNA methylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003682 chromatin binding Molecular Function

GO:0003886 DNA (cytosine-5-)-methyltransferase activity Molecular Function

GO:0051720 DNA (cytosine-5-)-methyltransferase activity, acting on CpNpG substrates Molecular Function

KEGG gene cross-reference

dosa:Os03g0226800

dosa:Os10g0104900

zma:542060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.911

Rank 1 · TkA01G113090 · TK1151

Cytoplasm0.136

Rank 2 · TkA01G113090 · TK1151

Mitochondrion0.030

Rank 3 · TkA01G113090 · TK1151

Cell membrane0.029

Rank 4 · TkA01G113090 · TK1151

Endoplasmic reticulum0.018

Rank 5 · TkA01G113090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01426BAH112-211 aa

PF02475TRM5-TYW2_MTfase250-317 aa

PF00145DNA_methylase265-318 aa

PF25802WWC1309-356 aa

PF00385Chromo374-428 aa

PF19334DUF5920388-461 aa

PF00145DNA_methylase437-791 aa

PF01426BAH648-664 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G113090	`PF01426`	BAH	112	211	1.4e-12	48.3
TkA01G113090	`PF02475`	TRM5-TYW2_MTfase	250	317	0.12	13.0
TkA01G113090	`PF00145`	DNA_methylase	265	318	1.4e-39	137.1
TkA01G113090	`PF25802`	WWC1	309	356	1.5	9.4
TkA01G113090	`PF00385`	Chromo	374	428	3.3e-10	40.4
TkA01G113090	`PF19334`	DUF5920	388	461	0.011	16.1
TkA01G113090	`PF00145`	DNA_methylase	437	791	1.4e-39	137.1
TkA01G113090	`PF01426`	BAH	648	664	1.4e-12	48.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49139`	Arabidopsis thaliana	sp\|O49139\|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1	49.700%	Swiss-Prot	Medium
`C0SQ89`	Oryza sativa subsp. japonica	sp\|C0SQ89\|CMT3_ORYSJ DNA (cytosine-5)-methyltransferase CMT3	52.800%	Swiss-Prot	High

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