Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2441 bp · TkA01G112910|TK1151|cDNA
ATCTAATCGCACACCCCATTAATCCGATATTTTCTCTTCACTGTCCCAATTCTCCATCTGAAATATAGCTCCGGCCTCTTTCTTAGGGTTTCTGATTTCTCCTAAAATTCTGCTTTGGTTCTCTCCGCCATTGATGCAATCTCTCTCCTCTTCAACTCCACAACGTTAGGCTTGAAGTTAATTGCAGTTTAGATTGAGAATTGATACTTGTAAGCCATGAGATCTTCTTGGGCAGACTCTGTTGACAATACAGCTTCAGG...
1875 bp · TkA01G112910|TK1151|CDS
ATGAGATCTTCTTGGGCAGACTCTGTTGACAATACAGCTTCAGGCTCCGACAACAATGGAGCTCCGGGAGCTGGCGGTAAGCCCGCTTATGTTCCACCTCATCTCCGGAACAGGCCACCTGCATCTAGCCAGGCGGCAGCCTCAGCCACAACACATAATGGTGCACCACCTACAAATGATAGGTTAGGATACAGCGGACAAACAAGCGGATCACGATGGACTGCTCCTATGCAGGACTACAGCAGGCCAGCATACAGCAC...
Protein
Download Protein FASTA624 aa · TkA01G112910|TK1151|PROTEIN
MRSSWADSVDNTASGSDNNGAPGAGGKPAYVPPHLRNRPPASSQAAASATTHNGAPPTNDRLGYSGQTSGSRWTAPMQDYSRPAYSTGGRGGGGGGGWGNRGGGWGGRDMEANPFGNDDIDGVEEIKTEQENNGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRYTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQFAQRPRGTRTVFPLALILSPTRELSCQINEEAKKFAY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G112910 |
|---|---|
| TK1151 ID | TkA01G112910 |
| OH-1004 ID | LXL04_004772 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 90.705 / OH-1004 79.944Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G112910 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:28661131-28665949 (+) | |||||||||||||||||||||
| Description | Similar to RH37: DEAD-box ATP-dependent RNA helicase 37 | |||||||||||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||||||||||||||
| GO annotations (OH1004 source) | GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005777 peroxisome Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0003724 RNA helicase activity Molecular Function GO:0003729 mRNA binding Molecular Function GO:0005524 ATP binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function | |||||||||||||||||||||
| KEGG gene cross-reference | ath:AT2G42520 ath:AT3G58510 ath:AT3G58570 dosa:Os03g0805200 dosa:Os07g0202100 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24418DUF755067-84 aaPF00270DEAD181-360 aaPF04851ResIII197-355 aaPF00271Helicase_C238-292 aaPF00271Helicase_C396-510 aaPF22590Cas3-like_C_2445-509 aaPF00270DEAD446-472 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G112910 | PF24418 | DUF7550 | 67 | 84 | 0.075 | 13.5 |
| TkA01G112910 | PF00270 | DEAD | 181 | 360 | 6.9e-49 | 166.5 |
| TkA01G112910 | PF04851 | ResIII | 197 | 355 | 0.042 | 14.5 |
| TkA01G112910 | PF00271 | Helicase_C | 238 | 292 | 4.5e-35 | 121.0 |
| TkA01G112910 | PF00271 | Helicase_C | 396 | 510 | 4.5e-35 | 121.0 |
| TkA01G112910 | PF22590 | Cas3-like_C_2 | 445 | 509 | 0.11 | 13.6 |
| TkA01G112910 | PF00270 | DEAD | 446 | 472 | 6.9e-49 | 166.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q84W89 | Arabidopsis thaliana | sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 | 74.400% | Swiss-Prot | High |
Q8LA13 | Arabidopsis thaliana | sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 | 72.000% | Swiss-Prot | High |
Q9M2F9 | Arabidopsis thaliana | sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 | 73.700% | Swiss-Prot | High |
Q75HJ0 | Oryza sativa subsp. japonica | sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 | 70.300% | Swiss-Prot | High |
Q2R1M8 | Oryza sativa subsp. japonica | sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C | 82.600% | Swiss-Prot | High |