TkA01G112480 | RubberDandelionOmics

Gene overview

TkA01G112480

Reference: TK1151 Chr: Chr01 Coordinates: 28571212-28571613 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

402 bp · TkA01G112480|TK1151|cDNA

ATGAGAGGCGCTTATTTATGCTGTAAGGAGGCGGCGAACCGGTTGAAACAAGGCGGCGGGGGGAGGATTATCTGTCTGACGTCATCGATGGTGGTTGCTCTGAGACCTGGGTTCGGGCCGTATGCAGCGTCTAAAGCGGCGGTTGAAGCTATGGTGAAGATTCTGGCGAAGGAACTGAAGGGGACGAGGATCACGGCGAACTGTGTAGCTCCGGGACCGATTGCGACAGATATGTTTTACAAAGGAAAAACTGAGGAGAT...

CDS

Download CDS FASTA

402 bp · TkA01G112480|TK1151|CDS

ATGAGAGGCGCTTATTTATGCTGTAAGGAGGCGGCGAACCGGTTGAAACAAGGCGGCGGGGGGAGGATTATCTGTCTGACGTCATCGATGGTGGTTGCTCTGAGACCTGGGTTCGGGCCGTATGCAGCGTCTAAAGCGGCGGTTGAAGCTATGGTGAAGATTCTGGCGAAGGAACTGAAGGGGACGAGGATCACGGCGAACTGTGTAGCTCCGGGACCGATTGCGACAGATATGTTTTACAAAGGAAAAACTGAGGAGAT...

Protein

Download Protein FASTA

133 aa · TkA01G112480|TK1151|PROTEIN

MRGAYLCCKEAANRLKQGGGGRIICLTSSMVVALRPGFGPYAASKAAVEAMVKILAKELKGTRITANCVAPGPIATDMFYKGKTEEMVNMAIEQSPLGRLGVPEDVAPLVGFLASDAGEWINGQIVRVNGGYV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G112480`
TK1151 ID	TkA01G112480
OH-1004 ID	LXL04_004766
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.248 / OH-1004 49.254 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G112480

Location Chr01:28571212-28571613 (+)

Description Similar to At3g03980: NADPH-dependent aldehyde reductase-like protein, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03980`	Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons.	No verified direct reference in this release
`At3g04000`	Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons.	NADPH-dependent reductases involved in the detoxification of reactive carbonyls in plants.2011 · DOI: 10.1074/jbc.m110.202226

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004766 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0044550 secondary metabolite biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0008106 alcohol dehydrogenase (NADP+) activity Molecular Function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Molecular Function

KEGG gene cross-reference

ath:AT3G03980

ath:AT3G04000

ffu:CLAFUR5_12910

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.336

Rank 1 · TkA01G112480 · TK1151

Cytoplasm0.260

Rank 2 · TkA01G112480 · TK1151

Peroxisome0.250

Rank 3 · TkA01G112480 · TK1151

Nucleus0.126

Rank 4 · TkA01G112480 · TK1151

Plastid0.097

Rank 5 · TkA01G112480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13561adh_short_C22-132 aa

PF00106adh_short2-81 aa

PF23441SDR5-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G112480	`PF13561`	adh_short_C2	2	132	1.5e-34	120.4
TkA01G112480	`PF00106`	adh_short	2	81	1.2e-18	68.1
TkA01G112480	`PF23441`	SDR	5	131	0.0011	19.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SQR4`	Arabidopsis thaliana	sp\|Q9SQR4\|ADRC3_ARATH NADPH-dependent aldehyde reductase-like protein, chloroplastic	74.200%	Swiss-Prot	High
`Q9SQR2`	Arabidopsis thaliana	sp\|Q9SQR2\|ADRC2_ARATH NADPH-dependent aldehyde reductase 2, chloroplastic	64.600%	Swiss-Prot	High

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