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How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G112320
Reference: TK1151 Chr: Chr01 Coordinates: 28531694-28538255 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

875 bp · TkA01G112320|TK1151|cDNA

CCAAAACATCACCCGACCCTATCTTCTGTTTTGCTTTCTCTATCCCTCACTCTCACCCCTCCCAACACCACAAGCTTTTCCTCTCACCGACGTGGCTATTCGCCGTTCGCACCTCCGCCGATCACTCACTACCTTTACTTTATCCCCATTCCTCCCTCTGTTGCTTCCTCAAACCACCGGTCACCGGCGAAACATTATTCTATACATATACATGATCGATGACCATTTCTCAACCTCACGCTCTCCCCAGTGTTTGTTGC...

CDS

Download CDS FASTA

2529 bp · TkA01G112320|TK1151|CDS

ATGACCATTTCTCAACCTCACGCTCTCCCCAGTGTTTGTTGCCCCCGTGCTATTTCCCTAACGAAATATATGAATCCATGGATTTCATGTAAACATTCCACATGTTTATTTCACAAGAAGGTAGCTTCTGTTGACTACGTACTGTTCAATAAGGTTTATTCAACAAAGAGATACCAGATAAATCTGTGTTTATTACAAGATGGGACTCTTGGTCTTAGTTCCAGATCATTAAATCCCCAATTATCCTGTTTGACCCATTA...

Protein

Download Protein FASTA

842 aa · TkA01G112320|TK1151|PROTEIN

MTISQPHALPSVCCPRAISLTKYMNPWISCKHSTCLFHKKVASVDYVLFNKVYSTKRYQINLCLLQDGTLGLSSRSLNPQLSCLTHYKSRRTRQFLPLASADDGVTVNGNPQASTSGDVEEMRVKLDQSLQNEEYNSALIQSLHDAARVYELAIKEKISSSKLSWFSTAWLGIDQNAWVKALSYQASVYSLLLAACEISSRGDRRDRDINVFVQRSLSRHSAPLESVIQEALSDKQPELYDWFLSNQIPSVVSSFVNYFE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G112320
TK1151 IDTkA01G112320
OH-1004 IDLXL04_004798
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.900
Protein coverage (%)TK1151 100.000 / OH-1004 96.018
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G112320
LocationChr01:28531694-28538255 (+)
DescriptionSimilar to Letm1: Mitochondrial proton/calcium exchanger protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004798 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006851 mitochondrial calcium ion transmembrane transport Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0071805 potassium ion transmembrane transport Biological Process
GO:1902600 proton transmembrane transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0031966 mitochondrial membrane Cellular Component
GO:0005432 calcium:sodium antiporter activity Molecular Function
GO:0005509 calcium ion binding Molecular Function
GO:0015386 potassium:proton antiporter activity Molecular Function
GO:0022857 transmembrane transporter activity Molecular Function
KEGG gene cross-reference
dme:Dmel_CG4589
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.974
Rank 1 · TkA01G112320 · TK1151
Nucleus0.032
Rank 2 · TkA01G112320 · TK1151
Cytoplasm0.026
Rank 3 · TkA01G112320 · TK1151
Cell membrane0.024
Rank 4 · TkA01G112320 · TK1151
Mitochondrion0.023
Rank 5 · TkA01G112320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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